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questions
3
votes
4
replies
611
views
Extract 16S rRNA gene from GenBank files?
NCBI
16S
17 months ago by
MSRS
▴ 580
5
votes
4
replies
918
views
From GCA identifiers, download Genbank file format?
NCBI
GenBank
updated 6 months ago by
Ram
40k • written 17 months ago by
MSRS
▴ 580
2
votes
5
replies
2.7k
views
Package or namespace load error in R
R
updated 20 months ago by
AVM
• 0 • written 20 months ago by
MSRS
▴ 580
1
vote
1
reply
772
views
Calculation of median relative abundance
R
20 months ago by
MSRS
▴ 580
0
votes
0
replies
503
views
R "stat_compare_means" pairwaise comparison
R
20 months ago by
MSRS
▴ 580
2
votes
2
replies
1.1k
views
Jaccard distance matric in Phyloseq
R
phyloseq
22 months ago by
MSRS
▴ 580
0
votes
0
replies
324
views
Bathymetric mapping to visualize temperature, chlorophyll-a, and salinity?
Bathymetric
mapping
GRASS
GIS
2.1 years ago by
MSRS
▴ 580
0
votes
0
replies
417
views
Classifying microbial community as pathogen, opportunistic pathogen, nonpathogen?
Microbes
Classification
2.4 years ago by
MSRS
▴ 580
1
vote
3
replies
792
views
Variant analysis for target NGS sequencing data?
NGS
Variants
updated 3 months ago by
Ram
40k • written 2.5 years ago by
MSRS
▴ 580
4
votes
7
replies
797
views
Fasta and csv file reformatting
sed
awk
fasta
csv
updated 2.6 years ago by
Biostar
20 • written 2.6 years ago by
MSRS
▴ 580
4
votes
8
replies
963
views
COG database merger python code update (part-2)
python
COG
database
2.6 years ago by
MSRS
▴ 580
2
votes
2
replies
768
views
COG database download error (part-1)
cog
annotation
ftp
updated 2.6 years ago by
Mensur Dlakic
★ 24k • written 2.6 years ago by
MSRS
▴ 580
0
votes
2
replies
790
views
BLAST like output from NGS fastq file
NGS
blast
updated 3 months ago by
Ram
40k • written 2.6 years ago by
MSRS
▴ 580
5
votes
3
replies
1.2k
views
WGS Metagenomics mapping for functional annotation (KEGG/ other database)?
metagenome
KEGG
functional
2.6 years ago by
MSRS
▴ 580
3
votes
3
replies
1.4k
views
Ramachandran plot analysis
protein
rampage
2.8 years ago by
MSRS
▴ 580
3
votes
4
replies
753
views
Empty in genebank extractor python code
python
gbk
2.8 years ago by
MSRS
▴ 580
0
votes
1
reply
1.9k
views
Save image from gephi overview
gephi
network
2.8 years ago by
MSRS
▴ 580
0
votes
1
reply
724
views
Plasmid sequences seperation from assembly contigs/fastq file of bacterial complete genome?
Assembly
plasmid
2.8 years ago by
MSRS
▴ 580
4
votes
5
replies
1.5k
views
how to test_differential_abundance_Wilcoxon rank test (Wilcoxon rank sum differential abundance test) from phyloseq object?
R
phyloseq
microbiome
2.9 years ago by
MSRS
▴ 580
2
votes
4
replies
707
views
How to bubble in ggplot2 or other package
R
ggplot2
updated 2.9 years ago by
zachary.wu.y
▴ 20 • written 2.9 years ago by
MSRS
▴ 580
5
votes
8
replies
1.1k
views
(Closed)Exract variable protein sequence from multiple seqece alinment?
alignment
updated 3 months ago by
Ram
40k • written 3.5 years ago by
MSRS
▴ 580
12
votes
13
replies
938
views
6 follow
Data management in R, perl or python
R
perl
python
updated 3.0 years ago by
mohammadhassanj
▴ 260 • written 3.0 years ago by
MSRS
▴ 580
1
vote
2
replies
1.3k
views
SRA file upload in NCBI (error in organism name options in attributes)
NCBI
SRA
Uploading
sequencing
3.0 years ago by
MSRS
▴ 580
1
vote
4
replies
4.0k
views
Kraken2 Error in buildind NCBI bacterial database
sequencing
NCBI
RefSeq
3.0 years ago by
MSRS
▴ 580
26
votes
22
replies
1.6k
views
6 follow
Metagenomic Data management
Metagenome
Data management
taxonomic assignment
updated 3.1 years ago by
zx8754
11k • written 3.1 years ago by
MSRS
▴ 580
8
votes
6
replies
894
views
How to extract genome from iontorent bam file?
assembly
alignment
genome
3.3 years ago by
MSRS
▴ 580
9
votes
11
replies
2.9k
views
Download all bacterial genome from Refseq in fasta format from NCBI
genome
3.4 years ago by
MSRS
▴ 580
6
votes
3
replies
1.6k
views
Remove stop codon containing sequences from multifasta(DNA) files
alignment
updated 3.4 years ago by
Hugo
▴ 370 • written 3.4 years ago by
MSRS
▴ 580
2
votes
2
replies
1.0k
views
Extract Sequences from Multiple sequence alignment containing special character like gap?
alignment
sequence
updated 3.4 years ago by
shenwei356
8.2k • written 3.4 years ago by
MSRS
▴ 580
3
votes
5
replies
1.4k
views
Multiple sequence alignment clean-up
alignment
updated 3.4 years ago by
onestop_data
▴ 330 • written 3.4 years ago by
MSRS
▴ 580
1
vote
3
replies
760
views
Rename fasta headers from CSV
sequence
3.8 years ago by
MSRS
▴ 580
2
votes
8
replies
1.1k
views
WARN: Killing pending tasks (3) Error executing process > 'RunQC (S3_test)' in AMR++2
nextflow
updated 3.9 years ago by
Pierre Lindenbaum
157k • written 3.9 years ago by
MSRS
▴ 580
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