User: shjenkins94

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Posts by shjenkins94

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Does ncRNA belong in RNA-seq data?
... I'm working on RNA-seq data from different tissues of a non-model rodent that I want to use for two purposes. One is to assemble a transcriptome and the other is DGE analysis. When I used FastQC on the samples, some of them had a high percentage of overrepresented sequences. I used blast with nt as ...
rna-seq written 2 days ago by shjenkins940 • updated 2 days ago by jared.andrews076.1k
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How to find in frame ORF that overlaps a feature?
... What is the best way to find the largest ORF that overlaps a given feature and is in the same frame as that feature? I'm doing a project where I do a TBLASTN search to find sequences similar to known genes. I want to find the longest ORF that overlaps each hit **and** is in the same frame as that hi ...
gene orf protein written 7 months ago by shjenkins940

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