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Posts by shjenkins94
... I'm working on RNA-seq data from different tissues of a non-model rodent that I want to use for two purposes. One is to assemble a transcriptome and the other is DGE analysis. When I used FastQC on the samples, some of them had a high percentage of overrepresented sequences. I used blast with nt as ...
... What is the best way to find the largest ORF that overlaps a given feature and is in the same frame as that feature? I'm doing a project where I do a TBLASTN search to find sequences similar to known genes. I want to find the longest ORF that overlaps each hit **and** is in the same frame as that hi ...
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