User: Arturo_M

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Arturo_M70
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5 years, 8 months ago
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7 years, 2 months ago
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Posts by Arturo_M

<prev • 15 results • page 1 of 2 • next >
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Haplogroup Prediction
... Hi Biostar community, I have human SNP phased data and I need to find haplogroups, which program (or programs) do you recommend? Thank you for your time ...
snp sequencing written 5.7 years ago by Arturo_M70 • updated 18 months ago by Shicheng Guo7.8k
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Is There A Tool For Converting A Variable Step Wig To A Fixed Step Wig?
... Hello Biostar community, is there a tool for converting a variable step wig file to a fixed step wig file? I used GEM-mappability and then gem-2-wig from the tool-package GEM-mapper, and the output is not what I need. The output I require is a fixed step, span=1 wig file. Thank you for your time ...
wiggle written 6.6 years ago by Arturo_M70 • updated 5.1 years ago by malbert10
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Comment: C: Is It Acceptable To Merge Control Replicates When Doing Peak Detection In Faire-
... Thank you, I tried to use Fseq but to produce the mappability files I understood I had to get a script from the Fseq developers, and I never got an answer from them. Do you know anything about that? ...
written 6.7 years ago by Arturo_M70
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Is It Acceptable To Merge Control Replicates When Doing Peak Detection In Faire-Seq Data?
... Hello I am starting to work with Faire-seq data, I am using MACS to analize it. For the moment I only have have 2 replicates of the control experiment data, sequenced and aligned to the reference genome. The problem is that when I run MACS with one of the control replicates I do not find the peaks o ...
macs written 6.7 years ago by Arturo_M70 • updated 6.7 years ago by Istvan Albert ♦♦ 81k
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Peak Confidence In Findpeaks
... Hello I am using Find Peaks without control data, is there any option so I can get statistical confidence on my peaks?. I see that the Min. cov. allowed is 0.001 but how do I know which is the best minimum coverage and minimum peak size ? Thank you for your help ...
chip-seq peak-calling written 6.8 years ago by Arturo_M70 • updated 6.8 years ago by apfejes160
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Comment: C: Parallelized Version Of Clustalw?
... Thanks for all your answers I will be checking Clustal-Omega ...
written 6.9 years ago by Arturo_M70
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Parallelized Version Of Clustalw?
... Hello, have you ever used a parallelized version of clustalw? I see that the most famous one is Clustal-MPI, but it does not seem to be updated. Thanks for your help ...
parallel clustalw written 6.9 years ago by Arturo_M70 • updated 6.9 years ago by Andreas2.4k
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Comment: C: Can You Create Your Own Bff Files For F-Seq?
... Thank you for your answer I will contact Furey lab. ...
written 7.0 years ago by Arturo_M70
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Can You Create Your Own Bff Files For F-Seq?
... Hello, I would like to use F-seq program but I wonder if there is a way to create your own bff files ( the background files)? I could not find anything useful in the software site. Thank you for your time ...
written 7.0 years ago by Arturo_M70 • updated 6.4 years ago by aboyle60
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Comment: C: How Do I Use Biomart To Get Upstream Flanking Sequence For A Gene?
... You have resolved my problem, thanks a lot! ...
written 7.2 years ago by Arturo_M70

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