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Answer: Answer: What are some major historic shifts in bioinformatic methodologies?
3.1 years ago by poisonAlien ★ 3.2k
1
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1
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9.9k
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Answer: A: ABSOLUTE to estimate tumour purity from WES data
updated 4.3 years ago by 43k • written 8.2 years ago by ★ 3.2k
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Answer: A: Is there an software can handle CNV analysis without control for WES data?
updated 4.3 years ago by 43k • written 9.9 years ago by ★ 3.2k
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Answer: A: micoarray analysis (affamytrix) software or tools
updated 4.3 years ago by 43k • written 9.9 years ago by ★ 3.2k
2
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1
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42k
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Answer: A: How to extract unique mapped results from Bowtie2 bam results?
updated 4.3 years ago by 43k • written 9.9 years ago by ★ 3.2k
1
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1
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3.1k
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Answer: A: calling variants between two strains
updated 4.4 years ago by 43k • written 8.4 years ago by ★ 3.2k
4
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0
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7.4k
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Answer: Answer: Is there a good manual/tutorial for TreeView?
updated 2.4 years ago by 43k • written 9.7 years ago by ★ 3.2k
3
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1
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6.7k
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Answer: A: How to use Samtools to remove reads whose mate does not map as expected
updated 4.5 years ago by 43k • written 9.8 years ago by ★ 3.2k
3
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1
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6.3k
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Answer: A: Comparing vcf with dbSNP
updated 4.5 years ago by 43k • written 9.8 years ago by ★ 3.2k
2
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0
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7.5k
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Answer: A: Customize IGV coverage track in R
updated 4.5 years ago by 43k • written 9.9 years ago by ★ 3.2k
4
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2
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11k
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Answer: A: How to use MutSigCV correctly
updated 5.5 years ago by 43k • written 8.5 years ago by ★ 3.2k
5
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1
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2.0k
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Answer: A: clonal populations in cancer samples
5.6 years ago by poisonAlien ★ 3.2k
0
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1.7k
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Answer: A: Finding out if non-coding transcripts from CPAT are tissue specific?
updated 5.6 years ago by 43k • written 8.2 years ago by ★ 3.2k
3
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1
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6.7k
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Answer: A: R phangorn phylogenetic analysis from somatic mutations' binary table
updated 5.6 years ago by 43k • written 8.2 years ago by ★ 3.2k
0
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1
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1.6k
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Answer: C: normalisation method for microarray
updated 5.6 years ago by 43k • written 8.2 years ago by ★ 3.2k
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0
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2.6k
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Answer: A: Software to analyse mutational signatures other than DeconstructSigs R package
6.3 years ago by poisonAlien ★ 3.2k
0
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1
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2.1k
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Answer: A: how to decide whether a mutation is driver for a specific cell line
6.5 years ago by poisonAlien ★ 3.2k
2
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0
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7.3k
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Answer: A: Annotation of ID from TCGA gene expression data
6.6 years ago by poisonAlien ★ 3.2k
2
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0
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1.6k
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Answer: A: Tools to identify the non-coding RNAs
6.7 years ago by poisonAlien ★ 3.2k
2
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0
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5.4k
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Answer: A: How to filter mutect2 VCF output?
6.8 years ago by poisonAlien ★ 3.2k
0
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1
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1.5k
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Answer: A: Find mutation rates for a set of genes
6.8 years ago by poisonAlien ★ 3.2k
0
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0
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2.7k
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Answer: A: Generate phylogenetic tree from primary and metastatic tumors
6.8 years ago by poisonAlien ★ 3.2k
0
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1
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2.7k
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Answer: A: Generate phylogenetic tree from primary and metastatic tumors
6.8 years ago by poisonAlien ★ 3.2k
2
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0
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1.6k
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Answer: A: Broad rules of thumb on # of variations
6.8 years ago by poisonAlien ★ 3.2k
2
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1
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13k
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Answer: A: How to annotate only selected genes on a heatmap
6.8 years ago by poisonAlien ★ 3.2k
0
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1
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2.4k
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Answer: A: Loss of heterozygosity analysis from SNV files
7.0 years ago by poisonAlien ★ 3.2k
1
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1
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2.6k
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Answer: A: finding normal and cancer samples from TCGA expression data
7.1 years ago by poisonAlien ★ 3.2k
0
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0
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5.4k
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Answer: A: estimating tumor purity and ploidy and CNV
7.1 years ago by poisonAlien ★ 3.2k
11
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3
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14k
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Answer: A: HISAT2 or Tophat2
7.3 years ago by poisonAlien ★ 3.2k
1
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2
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2.2k
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Answer: A: Can I use exome sequencing data from cancer patient's blood to call germline var
7.3 years ago by poisonAlien ★ 3.2k
3
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1
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2.5k
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Answer: A: MutSigCV output has p-value of 0
7.3 years ago by poisonAlien ★ 3.2k
1
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1
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2.6k
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Answer: A: differential gene expression analysis
7.3 years ago by poisonAlien ★ 3.2k
1
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0
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2.8k
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Answer: A: Annovar Output column "AAChange.knowngene" gives different values
7.3 years ago by poisonAlien ★ 3.2k
1
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0
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2.2k
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Answer: A: Germline mutation in cancer
7.3 years ago by poisonAlien ★ 3.2k
1
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0
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4.0k
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Answer: A: MCF-7 Cell Line DNA Sequence Data
7.4 years ago by poisonAlien ★ 3.2k
0
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0
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2.1k
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Answer: A: Normalizing with RMA and filtering with mas5calls (affymetrix arrays)
7.4 years ago by poisonAlien ★ 3.2k
2
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0
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2.9k
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Answer: A: How to draw lego plot Using Mutation Data (MAF format input)?
7.5 years ago by poisonAlien ★ 3.2k
0
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0
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1.9k
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Answer: A: how to interprete the somatic mutations with low frequency in tumor sample compa
7.6 years ago by poisonAlien ★ 3.2k
2
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2
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6.5k
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Answer: A: VarScan and Samtools - how to process my data?
7.7 years ago by poisonAlien ★ 3.2k
1
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2
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4.8k
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Answer: A: Script for analyzing idat (illumina) microarray files with limma, any suggestion
7.8 years ago by poisonAlien ★ 3.2k
1
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0
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7.9k
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Answer: A: Identify lncRNA in list of Ensemble ID's
7.8 years ago by poisonAlien ★ 3.2k
0
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0
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2.8k
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Answer: A: MuTect is giving strikingly different results
7.8 years ago by poisonAlien ★ 3.2k
2
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1
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1.6k
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Answer: A: any papers/methods on inferring whole genome doubling/non-reciprocal translocati
7.8 years ago by poisonAlien ★ 3.2k
4
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0
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3.5k
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Answer: A: Cancer Patient Derived Xenograft (PDX) Genomic Analysis
7.8 years ago by poisonAlien ★ 3.2k
2
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0
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2.7k
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Answer: A: Visualizing mutations burden vs. gene expression
7.8 years ago by poisonAlien ★ 3.2k
0
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0
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9.0k
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Answer: A: Finding overlapping ranges in R
7.9 years ago by poisonAlien ★ 3.2k
3
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0
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3.2k
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Answer: A: R package for clonal expansion
7.9 years ago by poisonAlien ★ 3.2k
1
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0
replies
4.1k
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Answer: A: mutation signature in cancer
8.0 years ago by poisonAlien ★ 3.2k
4
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1
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4.8k
views
Answer: A: Tumor phylogenetic tree software
8.1 years ago by poisonAlien ★ 3.2k
0
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0
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5.0k
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Answer: A: Clients to access TCGA data from R and Python
8.1 years ago by poisonAlien ★ 3.2k
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