User: asente

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asente10
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3 months, 3 weeks ago
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6 months ago
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Posts by asente

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Defining treshold for gene expression in single cell RNA-seq
... What would be a standard way to define a raw count treshold above which it would be safe to assume a gene is expressed in the particular cell based on single-cell RNAseq counts? Many thanks. ...
single-cell rna seq rna-seq written 5 months ago by asente10
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Comment: C: Cannonical human sequence missing in OMA database?
... Dear Christophe, many thanks for your helpful and detailed answer. Best wishes. ...
written 5 months ago by asente10
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Retreiving 1:1 orthologs from Ensembl Compara using R Biomart
... Hello, Is there a way to retreive Uniprot IDs and cannonical sequences of all 1:1 orthologs for a particular human gene from Ensembl Compara using R BiomaRt using Uniprot ID as a query? Many thanks. ...
orthologs ensembl biomart compara R written 6 months ago by asente10 • updated 6 months ago by Emily_Ensembl20k
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Cannonical human sequence missing in OMA database?
... Hello, I would like to fetch 1:1 orthologs for **GBRA2_HUMAN**, a cannonical GABAA receptor alpha-2 subunit sequence as defined by Uniprot (**Uniprot ID: P47869**), however it seems that this sequence is not available in the OMA database. Could you please let me know if there is an alternative way ...
software error R oma written 6 months ago by asente10 • updated 5 months ago by Christophe Dessimoz650

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