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Answer: Answer: featureCounts
2.3 years ago by Rogerio Ribeiro ▴ 110
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Comment: Comment: Difference in results from DESeq to EdgeR
2.3 years ago by Rogerio Ribeiro ▴ 110
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1.3k
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Comment: Comment: Difference in results from DESeq to EdgeR
2.3 years ago by Rogerio Ribeiro ▴ 110
2
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5
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1.3k
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Difference in results from DESeq to EdgeR
EdgeR RNA-seq pseudobulk DGE DESeq2
updated 2.3 years ago by 8.6k • written 2.3 years ago by ▴ 110
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1
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1.8k
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Unable to load scRNAseq data into R with Read10X
Seurat scRNA-seq RNA-seq Read10x single-cell
2.3 years ago by Rogerio Ribeiro ▴ 110
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938
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Comment: Comment: Transcript assemblers from RNA-seq reads - a request for tool recommendation
2.5 years ago by Rogerio Ribeiro ▴ 110
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2.4k
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Comment: Comment: featureCounts has low successfully assigned reads
2.5 years ago by Rogerio Ribeiro ▴ 110
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1
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2.4k
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Comment: Comment: featureCounts has low successfully assigned reads
2.5 years ago by Rogerio Ribeiro ▴ 110
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1.6k
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Comment: Comment: Using outgroup in gene family dendograms
3.0 years ago by Rogerio Ribeiro ▴ 110
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1
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1.6k
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Comment: Comment: Using outgroup in gene family dendograms
3.0 years ago by Rogerio Ribeiro ▴ 110
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6
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1.6k
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Using outgroup in gene family dendograms
mega dendograms
3.0 years ago by Rogerio Ribeiro ▴ 110
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1
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1.9k
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Comment: Comment: Quantification of stranded RNA-seq data
3.0 years ago by Rogerio Ribeiro ▴ 110
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1
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1.9k
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Comment: Comment: Quantification of stranded RNA-seq data
3.0 years ago by Rogerio Ribeiro ▴ 110
3
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8
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1.9k
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Quantification of stranded RNA-seq data
featureCounts RNA-seq stranded Hisat2
updated 3.0 years ago by 8.6k • written 3.0 years ago by ▴ 110
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1
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1.9k
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Comment: Comment: Quantification of stranded RNA-seq data
3.0 years ago by Rogerio Ribeiro ▴ 110
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1
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1.1k
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Comment: Comment: Different files with SRA Explorer and SRA toolkit fasterq-dump
3.0 years ago by Rogerio Ribeiro ▴ 110
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3
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1.1k
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Different files with SRA Explorer and SRA toolkit fasterq-dump
SRA_Explorer SRA-toolkit
updated 3.0 years ago by 141k • written 3.0 years ago by ▴ 110
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3.0k
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Comment: Comment: Trouble downloading files with fasterq-dump
3.0 years ago by Rogerio Ribeiro ▴ 110
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2
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3.0k
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Trouble downloading files with fasterq-dump
sratoolkit
3.0 years ago by Rogerio Ribeiro ▴ 110
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728
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Comment: C: featurecounts -p Paried ends which count total to use as read1 &read 2 give diff
3.1 years ago by Rogerio Ribeiro ▴ 110
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1.0k
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Comment: C: Select and keep only some results from DESEq2
3.1 years ago by Rogerio Ribeiro ▴ 110
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1
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1.8k
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Comment: C: few genes were annotated to GO terms using online eggnog-mapper
3.1 years ago by Rogerio Ribeiro ▴ 110
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553
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Advantages of different methods to transfer GO annotations
RNA-Seq GO Annotation
3.1 years ago by Rogerio Ribeiro ▴ 110
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4
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934
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Bacterial refseq to remove contaminats
transcritpome RNA-seq
updated 3.1 years ago by • 0 • written 3.2 years ago by ▴ 110
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1
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934
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Comment: C: Bacterial refseq to remove contaminats
3.2 years ago by Rogerio Ribeiro ▴ 110
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2.3k
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Comment: C: Finding assembled transcript sequences from StringTie output
3.2 years ago by Rogerio Ribeiro ▴ 110
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1
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2.3k
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Comment: C: Finding assembled transcript sequences from StringTie output
3.2 years ago by Rogerio Ribeiro ▴ 110
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2.3k
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Comment: C: Finding assembled transcript sequences from StringTie output
3.2 years ago by Rogerio Ribeiro ▴ 110
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2
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2.3k
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Comment: C: Finding assembled transcript sequences from StringTie output
3.2 years ago by Rogerio Ribeiro ▴ 110
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0
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863
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Comment: C: Identify contaminants in my transcriptomic sequences
3.2 years ago by Rogerio Ribeiro ▴ 110
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1
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863
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Comment: C: Identify contaminants in my transcriptomic sequences
3.2 years ago by Rogerio Ribeiro ▴ 110
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4
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863
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Identify contaminants in my transcriptomic sequences
Assembly transcriptome de-novo
updated 3.2 years ago by 141k • written 3.2 years ago by ▴ 110
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5
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903
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Optimized genome browser
RNA Genome
updated 3.2 years ago by 15k • written 3.2 years ago by ▴ 110
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0
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903
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Comment: C: Optimized genome browser
3.2 years ago by Rogerio Ribeiro ▴ 110
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1
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850
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Answer: A: which kind of normalization is suitable for corr.test
3.2 years ago by Rogerio Ribeiro ▴ 110
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735
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Comment: C: Question regarding stringtie algorithm and assembly strategy
3.2 years ago by Rogerio Ribeiro ▴ 110
0
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2
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735
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Question regarding stringtie algorithm and assembly strategy
Assembly RNA-Seq
updated 3.2 years ago by 19k • written 3.2 years ago by ▴ 110
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1
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1.0k
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Comment: C: TruSeq sequencing output
3.2 years ago by Rogerio Ribeiro ▴ 110
1
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3
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1.0k
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TruSeq sequencing output
RNA-Seq True-seq2
updated 3.2 years ago by 141k • written 3.2 years ago by ▴ 110
0
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1
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782
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Answer: A: About alignment rate of Dendrobium officinale (a plant) used RSEM software
3.6 years ago by Rogerio Ribeiro ▴ 110
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0
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2.1k
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Comment: C: Estimaing insert size from a pair-end library using bbmap
3.6 years ago by Rogerio Ribeiro ▴ 110
0
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1
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2.1k
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Comment: C: Estimaing insert size from a pair-end library using bbmap
3.6 years ago by Rogerio Ribeiro ▴ 110
0
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1
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2.1k
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Comment: C: Estimaing insert size from a pair-end library using bbmap
3.6 years ago by Rogerio Ribeiro ▴ 110
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0
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2.1k
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Comment: C: Estimaing insert size from a pair-end library using bbmap
3.6 years ago by Rogerio Ribeiro ▴ 110
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2
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2.1k
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Comment: C: Estimaing insert size from a pair-end library using bbmap
3.6 years ago by Rogerio Ribeiro ▴ 110
5
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10
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2.1k
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Estimaing insert size from a pair-end library using bbmap
RNA-Seq bbmap
3.6 years ago by Rogerio Ribeiro ▴ 110
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1
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2.4k
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Comment: C: Question regarding minimap2 presets
3.6 years ago by Rogerio Ribeiro ▴ 110
0
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3
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2.4k
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Question regarding minimap2 presets
minimap2 alignment rna-seq
3.6 years ago by Rogerio Ribeiro ▴ 110
0
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0
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777
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Hybrid transcriptome assembly
stringTie Nanopore Illumina Rna-seq
3.6 years ago by Rogerio Ribeiro ▴ 110
0
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1
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3.2k
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Detail with minimap2 output
minimap2 RNA-seq Nanopore
3.6 years ago by Rogerio Ribeiro ▴ 110
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