User: huynguyen96.dnu
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Posts by huynguyen96.dnu
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... #This sets up the initial parameters
lambda <- seq(1,15,0.5) #Tuning parameter lambda
Tau <- seq(0.1,1.5,0.1) #Tuning parameter tau
K=7; #Number of clusters
X=t(c_exp) #row=patients, column=gene
Z=t(c_cna) #row=patients, column=gene
Tune1 <- AWNcut.TuningS ...
written 5 days ago by
huynguyen96.dnu • 0
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... > debug(AWNcut)
> Tune1 <- AWNcut.TuningSelection(X, Z, K, lambda, Tau, B=500, L=1000)
debugging in: AWNcut(X, Z, K, lambda, Tau, B, L = 1000)
debug at AWNCut_fun.R#56: {
X <- scale(X)
Z <- scale(Z)
Para <- as.data.frame(cbind(rep(lambda, eac ...
written 5 days ago by
huynguyen96.dnu • 0
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... Hi Russhh,
I've just written additionally a code line like you said:
debug(AWNcut)
and it doesn't report any problem?
And what does "caledl AWNcut.TuningSelection with your input" means? can you figure it out? ...
written 5 days ago by
huynguyen96.dnu • 0
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... First, I pre-process my dataset ([TCGA breast cancer][1] including GE and CNA) like the way the below paper did on TCGA cutaneous melanoma:
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5559859/pdf/12864_2017_Article_3990.pdf
(Data analysis, Page 9 of 12)
At the end of pre-processing, I have TCGA BR ...
written 5 days ago by
huynguyen96.dnu • 0
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