User: huynguyen96.dnu

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Posts by huynguyen96.dnu

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Comment: C: Missing value where TRUE/FALSE needed in R
... #This sets up the initial parameters lambda <- seq(1,15,0.5) #Tuning parameter lambda Tau <- seq(0.1,1.5,0.1) #Tuning parameter tau K=7; #Number of clusters X=t(c_exp) #row=patients, column=gene Z=t(c_cna) #row=patients, column=gene Tune1 <- AWNcut.TuningS ...
written 5 days ago by huynguyen96.dnu0
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Comment: C: Missing value where TRUE/FALSE needed in R
... > debug(AWNcut) > Tune1 <- AWNcut.TuningSelection(X, Z, K, lambda, Tau, B=500, L=1000) debugging in: AWNcut(X, Z, K, lambda, Tau, B, L = 1000) debug at AWNCut_fun.R#56: { X <- scale(X) Z <- scale(Z) Para <- as.data.frame(cbind(rep(lambda, eac ...
written 5 days ago by huynguyen96.dnu0
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Comment: C: Missing value where TRUE/FALSE needed in R
... Hi Russhh, I've just written additionally a code line like you said: debug(AWNcut) and it doesn't report any problem? And what does "caledl AWNcut.TuningSelection with your input" means? can you figure it out? ...
written 5 days ago by huynguyen96.dnu0
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Missing value where TRUE/FALSE needed in R
... First, I pre-process my dataset ([TCGA breast cancer][1] including GE and CNA) like the way the below paper did on TCGA cutaneous melanoma: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5559859/pdf/12864_2017_Article_3990.pdf (Data analysis, Page 9 of 12) At the end of pre-processing, I have TCGA BR ...
R clustering written 5 days ago by huynguyen96.dnu0

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