User: eknichols

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eknichols10
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Posts by eknichols

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Comment: C: Extract Y chromosome genes from the mc57bl6nj_gene_ensembl dataset? No Y filter?
... OH that makes sense--thanks for clarifying :) I will try that and hopefully there aren't so many differences between GRC and B6 when it comes to geneIDs on the Y chromosome! From Eva ...
written 6 weeks ago by eknichols10
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Comment: C: Extract Y chromosome genes from the mc57bl6nj_gene_ensembl dataset? No Y filter?
... Oh my goodness, how WEIRD. Thanks for your answer, Emily! Out of curiosity, can you hazard a guess as to why? There should be 172 coding genes (according to here: https://uswest.ensembl.org/Mus_musculus/Location/Chromosome?db=core;g=ENSMUSG00000094658;r=Y:2830680-2841854). Do you have advice on an ...
written 6 weeks ago by eknichols10
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Extract Y chromosome genes from the mc57bl6nj_gene_ensembl dataset? No Y filter?
... Hi everyone, I am trying to extract all Y chromosome genes from the mus musculus C57/B6 genome dataset ("mc57bl6nj_gene_ensembl") using biomaRt in R. The purpose is to create a list so I can extract Y chromosome gene counts later in my single-cell analysis pipeline. My code worked successfully fo ...
genome R biomart sequence gene written 7 weeks ago by eknichols10 • updated 6 weeks ago by zx87548.8k

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