User: deb0612

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deb061210
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Posts by deb0612

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How to set group in EdgeR and DEseq2?
... I got a sample sheet like this: name condition sampe1 T sampe2 T sampe3 N sampe4 T sampe5 N sampe6 N sampe7 N (T:tumor, N:normal) When I use this condition in DEseq2, it will use N vs T as default. If I set `group <- f ...
R deseq2 rna-seq edger written 3 days ago by deb061210 • updated 2 days ago by nilislam30
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Answer: A: Empty output when use HOMER annotatePeak.pl
... Thank you! It had been solved. ...
written 3 days ago by deb061210
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Empty output when use HOMER annotatePeak.pl
... when I use the following command USAGE: perl bin/annotatePeaks.pl 9A26_MarkDuplicates_summits.bed hg38 I got massage below ===================================================== Peak file = RCC/ATAC-seq/9A26_MarkDuplicates_summits.bed Genome = hg38 Organism = human sh: 1: bed2pos.pl: not found ...
software error chip-seq written 3 months ago by deb061210

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