User: djamalova.d

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djamalova.d10
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Posts by djamalova.d

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Comment: C: Map gene presence/absence (i.e. gain, loss, duplication) on phylogenetic tree
... Thank you for your response. I have a species tree and output file from ProteinOrtho5. I converted it into binary (0,1) and loaded it into Count software. There I performed PGL analysis which gave me a number of gain/loss per node. When I tried to extract it I got the same proteinortho file. ...
written 9 weeks ago by djamalova.d10
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Map gene presence/absence (i.e. gain, loss, duplication) on phylogenetic tree
... I got PGL (propensity for gene loss) output as counted gene gain/loss. I couldn't extract it as a phylogenetic tree. Is there any software where I can manually write all these numbers on phylogenetic tree or can I perform it via biopython? Here is a link for a picture showing which result I would l ...
phylogeny pangenome written 9 weeks ago by djamalova.d10 • updated 9 weeks ago by Michael Dondrup47k

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