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1
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8
replies
9.2k
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Genomestudio: The Project Can Not Be Created. No Valid Samples Were Loaded
updated 3.7 years ago by • 0 • written 10.6 years ago by ▴ 720
7
votes
4
replies
4.2k
views
Alignment Software To Only Find Number Of Short Read Alignments?
short read alignment
updated 4.4 years ago by 20 • written 11.2 years ago by ▴ 720
0
votes
4
replies
3.9k
views
Finding Mirna Seed Region By Aligning Mirna And Seeing That Positions 2-8 Hit Fewer Snps
mirna snp sequence
updated 4.5 years ago by 20 • written 10.7 years ago by ▴ 720
9
votes
10
replies
11k
views
Memory-Efficient Way To Transpose Csv/Text File?
matrix scripting
updated 5.0 years ago by 20 • written 10.5 years ago by ▴ 720
14
votes
9
replies
4.7k
views
Five Step Method For Small RNA Analysis
RNA-seq
updated 14 months ago by 43k • written 11.6 years ago by ▴ 720
5
votes
9
replies
1.7k
views
7 follow
Can I read chrom, strand, pos, len from bam files without htslib?
htslib
updated 5.5 years ago by 3.9k • written 5.5 years ago by ▴ 720
0
votes
5
replies
1.9k
views
pysam: How do I type an AlignedSegment in Cython?
cython pysam
updated 5.5 years ago by 20 • written 5.5 years ago by ▴ 720
11
votes
8
replies
3.3k
views
Minimal example of using htslib from conda to build a simple c file?
htslib conda c
updated 5.5 years ago by 3.0k • written 5.5 years ago by ▴ 720
12
votes
20
replies
2.2k
views
Is there a single header file somewhere I can use to read bam?
cpp bam c
updated 11 months ago by 43k • written 5.5 years ago by ▴ 720
6
votes
3
replies
2.1k
views
How do I get the strand of a read when using htslib?
htslib
updated 5.5 years ago by 35k • written 5.5 years ago by ▴ 720
3
votes
2
replies
4.2k
views
Zeroes In Bim File Instead Of Allele Codes
plink error
updated 7.6 years ago by ▴ 10 • written 10.3 years ago by ▴ 720
2
votes
3
replies
4.7k
views
Why Are These Snps On The Wrong Strand Compared To The Reference Genome
snp gwas strand
updated 7.9 years ago by ▴ 40 • written 10.2 years ago by ▴ 720
5
votes
6
replies
3.2k
views
Creating Custom Bed File For Refgene (Beginning 500 Bp Upstream And Extending 2000 Bp Into The Gene)
ucsc
updated 8.0 years ago by 20 • written 11.1 years ago by ▴ 720
6
votes
11
replies
4.7k
views
How To Find Clusters Of Small Rna With Interval-Trees, Bx-Python
bx-python interval-tree
updated 20 months ago by 43k • written 11.5 years ago by ▴ 720
10
votes
4
replies
14k
views
Converting Tped To Ped
plink ped
updated 8.5 years ago by ▴ 50 • written 10.5 years ago by ▴ 720
5
votes
6
replies
2.3k
views
Bowtie Outputs Hits That Are Shorter Than The Reads Aligned
bowtie
updated 8.8 years ago by 20 • written 10.5 years ago by ▴ 720
10
votes
2
replies
8.4k
views
Computing R Squared Statistics For Imputation Results - How?
imputation
updated 9.0 years ago by 20 • written 10.5 years ago by ▴ 720
15
votes
12
replies
8.2k
views
7 follow
Translating Genomic Locations Between Species
conservation alignment
updated 9.1 years ago by • 0 • written 11.0 years ago by ▴ 720
63
votes
27
replies
27k
views
18 follow
Data Too Big To Be Stored In Memory: Common Options
python
updated 14 months ago by 43k • written 11.4 years ago by ▴ 720
3
votes
5
replies
2.4k
views
Installing/Recreating Ucsc Annotation Database Locally
ucsc annotation database
updated 10.2 years ago by ★ 1.6k • written 11.4 years ago by ▴ 720
4
votes
3
replies
9.2k
views
What Is A Snp Manifest And What Is A Snp Cluster File?
snp
updated 10.4 years ago by ★ 1.5k • written 10.6 years ago by ▴ 720
3
votes
3
replies
2.0k
views
Representing Short Read Clusters As Feature Vectors- Which Properties To Include?
short read
updated 10.5 years ago by 20 • written 11.4 years ago by ▴ 720
2
votes
1
reply
2.0k
views
Clustalw: Why Is It Bad That Many Similar Sequences Dominate The Alignment Score?
clustalw
updated 10.5 years ago by 20 • written 11.0 years ago by ▴ 720
7
votes
2
replies
5.2k
views
How Do I Find The Number Of Individuals In A Vcf File?
vcf
10.5 years ago by Click downvote ▴ 720
8
votes
10
replies
2.7k
views
Curious Very Long Snp In 1Kg Data
updated 10.5 years ago by 104k • written 10.5 years ago by ▴ 720
3
votes
4
replies
3.1k
views
Should Making Bgzip Files Take A Long Time?
updated 10.5 years ago by 10k • written 10.6 years ago by ▴ 720
6
votes
4
replies
6.1k
views
Using 1000 Genomes Vcf To Plink Conversion Script To Convert My Own Vcf Files?
1000genomes vcf ped
updated 2.4 years ago by 43k • written 10.6 years ago by ▴ 720
30
votes
13
replies
7.2k
views
6 follow
Bioinformatics: How To Version Control Small Scripts Located All Over The Server.
scripts version-control
updated 14 months ago by 43k • written 10.6 years ago by ▴ 720
1
vote
1
reply
3.4k
views
How To Tell If Bed/Bim/Fam Data Are Phased?
bed
updated 10.6 years ago by 11k • written 10.6 years ago by ▴ 720
4
votes
2
replies
6.4k
views
What Does The Term Low Pass Mean?
genome sequencing
updated 10.6 years ago by 22k • written 10.6 years ago by ▴ 720
6
votes
7
replies
2.5k
views
Collapse Reads That Are Substrings Of Other Reads In Same Library
reads library
updated 10.6 years ago by 5.8k • written 10.6 years ago by ▴ 720
2
votes
4
replies
2.8k
views
Computing Similarity Between Lists Of Enriched Terms
enrichment analysis overlap
updated 10.7 years ago by ▴ 520 • written 10.7 years ago by ▴ 720
3
votes
3
replies
2.8k
views
Should Bowtie Hits On Negative Strand Be Counted Downwards To Find The End Of The Alignment (Illustrated)?
bowtie
updated 10.9 years ago by 5.2k • written 10.9 years ago by ▴ 720
4
votes
6
replies
2.0k
views
Where To Find Libraries/Read Files Of All Rnas Found In A Cell
rna library human mouse
updated 10.9 years ago by ▴ 520 • written 10.9 years ago by ▴ 720
2
votes
1
reply
2.4k
views
Where To Find Rnas Used In Gene Expression Studies?
rna geo
updated 10.9 years ago by 104k • written 10.9 years ago by ▴ 720
0
votes
0
replies
2.7k
views
Should You Combine Ontologies In Gohypergparams? If So, How?
bioconductor
10.9 years ago by Click downvote ▴ 720
1
vote
1
reply
2.0k
views
What Does It Mean That Blosum Does Not Model Real Substitutions (As Opposed To Say Pam?)
updated 11.0 years ago by ★ 3.2k • written 11.0 years ago by ▴ 720
9
votes
7
replies
15k
views
Why Aren'T Guide Trees (Necessarily) Phylogenetic Trees?
tree phylogenetics
updated 11.0 years ago by ★ 3.2k • written 11.0 years ago by ▴ 720
3
votes
3
replies
3.2k
views
Interpreting Ucsc Net Files
ucsc
updated 11.0 years ago by ★ 4.1k • written 11.0 years ago by ▴ 720
5
votes
4
replies
2.2k
views
How To Get Collections Of Reads From Genbank
genbank
updated 13 months ago by 43k • written 11.0 years ago by ▴ 720
11
votes
2
replies
2.4k
views
How To Find Out Whether There Is A Statistical Difference Between Two Sets Of Strings?
statistics
updated 11.0 years ago by ▴ 740 • written 11.0 years ago by ▴ 720
5
votes
5
replies
2.6k
views
How To Pick Out Refgene Parts Of Chromosome In Fasta Format
python fasta chromosome
updated 11.1 years ago by 49k • written 11.1 years ago by ▴ 720
22
votes
17
replies
5.0k
views
6 follow
Creating Reads With Same Nucleotides And Dinucleotides- I.E. Scrambling Reads
python reads
updated 11.1 years ago by 24k • written 11.1 years ago by ▴ 720
2
votes
4
replies
2.9k
views
Using Bowtie To Only Search In Restricted Regions
bowtie
updated 11.2 years ago by ★ 7.8k • written 11.2 years ago by ▴ 720
15
votes
10
replies
5.1k
views
Best Python Support Vector Machine Implementation For Bioinformatics (Classifying Short Reads)?
python
updated 11.4 years ago by 5.2k • written 11.4 years ago by ▴ 720
5
votes
2
replies
1.5k
views
Are There Any Good Methods/Software To Identify Pirna In Short Read Libraries?
updated 11.4 years ago by ▴ 380 • written 11.4 years ago by ▴ 720
4
votes
4
replies
2.0k
views
What Are The Files Named "Random" In Genome Sequences?
deleted-post
updated 11.4 years ago by 161k • written 11.4 years ago by ▴ 720
8
votes
2
replies
1.9k
views
Cluster Trees, Bx-Python: Is It Possible That The Number Of Clusters Increase As Cluster_Distance Increases?
updated 11.4 years ago by 16k • written 11.4 years ago by ▴ 720
7
votes
4
replies
11k
views
Cutadapt: Remove Too Short Reads
bowtie fastq
updated 11.5 years ago by 11k • written 11.5 years ago by ▴ 720
2
votes
2
replies
1.9k
views
Converting Gene Expression Omnibus Format To Fasta
bowtie fasta
updated 11.5 years ago by 16k • written 11.5 years ago by ▴ 720
51 results • Page 1 of 2
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