User: cross12tamu

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cross12tamu10
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Posts by cross12tamu

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Comment: C: Programatically (Python) Navigate from BLASTp results to Genbank file
... I was able to construct a pipeline with all of your recomendations with BioPython! Thank you so much for your replies and time spent! THANKS! ...
written 4 weeks ago by cross12tamu10
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Comment: C: Programatically (Python) Navigate from BLASTp results to Genbank file
... Thank you for the feedback. So with protein accessions (such as WP_000907403.1, EAW7713904.1, etc...) I can use them to retrieve Genbank files? When I try this in Python: `Entrez.efetch(db='nuccore', id=id_list[1], rettype="gbwithparts", retmode="text")` where id_list[1] = ADT73839.1 returns ...
written 5 weeks ago by cross12tamu10
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Programatically (Python) Navigate from BLASTp results to Genbank file
... I am using BioPython to run a BLASTp on some proteins of interest. With the HSP's, I am wanting to take the returned accession and then fetch the corresponding GenBank file from which this protein is coded from. For a hopefully simple example, if I got the Chaperone protein DnaK for E. coli K12MG1 ...
python biopython blast written 5 weeks ago by cross12tamu10 • updated 5 weeks ago by massa.kassa.sc3na230

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