0
votes
0
replies
16
views
0
votes
0
replies
58
views
0
votes
1
reply
122
views
updated 1 hour ago by
Ram
43k
•
written 7 hours ago by
anasjamshed
▴
120
2
votes
1
reply
510
views
updated 6 hours ago by
etiennedanis
▴
10
•
written 19 months ago by
DareDevil
★
4.3k
0
votes
0
replies
57
views
795
votes
167
replies
141k
views
109 follow
updated 12 weeks ago by
Biostar
2.6k
•
written 7.4 years ago by
Istvan Albert
100k
0
votes
1
reply
136
views
1
vote
3
replies
319
views
1
vote
1
reply
174
views
0
votes
0
replies
79
views
0
votes
1
reply
153
views
1
vote
1
reply
140
views
updated 13 hours ago by
Ram
43k
•
written 13 hours ago by
jammydodger123456
▴
40
0
votes
1
reply
263
views
0
votes
2
replies
204
views
3 hours ago by
22211020193
•
0
0
votes
0
replies
81
views
1
vote
2
replies
173
views
updated 12 hours ago by
Ram
43k
•
written 14 hours ago by
aniigodwinn
•
0
0
votes
2
replies
179
views
updated 14 hours ago by
colindaven
6.3k
•
written 19 hours ago by
valentinatsar
•
0
1
vote
3
replies
183
views
0
votes
8
replies
345
views
updated 13 hours ago by
Pierre Lindenbaum
161k
•
written 16 hours ago by
me
•
0
0
votes
1
reply
197
views
updated 17 hours ago by
Gordon Smyth
★
7.0k
•
written 8 days ago by
nhaus
▴
300
0
votes
0
replies
121
views
4
votes
2
replies
1.6k
views
0
votes
5
replies
402
views
updated 4 hours ago by
joe
▴
490
•
written 19 hours ago by
quentinperriere
•
0
0
votes
1
reply
127
views
updated 18 hours ago by
DKA
▴
40
•
written 20 hours ago by
james.melhorn
•
0
0
votes
3
replies
190
views
updated 16 hours ago by
Mike Smith
★
2.0k
•
written 20 hours ago by
manaswwm
▴
490
0
votes
1
reply
114
views
1
vote
2
replies
130
views
21 hours ago by
hagl
▴
10
0
votes
0
replies
81
views
22 hours ago by
chemokine-1
▴
10
0
votes
3
replies
217
views
0
votes
1
reply
145
views
0
votes
2
replies
150
views
0
votes
0
replies
101
views
23 hours ago by
Ali
•
0
2
votes
4
replies
240
views
1 day ago by
kirill.zaslavsky
•
0
0
votes
2
replies
174
views
0
votes
1
reply
189
views
5
votes
4
replies
2.7k
views
updated 1 day ago by
hamarillo
▴
70
•
written 5.6 years ago by
silviajserrano
▴
50
2
votes
2
replies
187
views
3
votes
7
replies
348
views
0
votes
0
replies
104
views
0
votes
0
replies
98
views
3
votes
3
replies
358
views
0
votes
0
replies
111
views
3
votes
6
replies
10k
views
updated 1 day ago by
Bioinfotec
▴
10
•
written 7.5 years ago by
nut_B
▴
10
1
vote
6
replies
318
views
updated 1 day ago by
shenwei356
8.4k
•
written 1 day ago by
Jérémie
•
0
1
vote
1
reply
144
views
0
votes
0
replies
134
views
1 day ago by
Ben_Ensembl
★
2.4k
2
votes
3
replies
219
views
updated 1 day ago by
GenoMax
141k
•
written 1 day ago by
lorena9132
•
0
0
votes
0
replies
130
views
0
votes
0
replies
114
views
1 day ago by
solomoncharles77
▴
90
Recent Locations •
All
Adelaide, 3 minutes ago
China, 4 minutes ago
UCLA, 6 minutes ago
Norway, 7 minutes ago
USA, 9 minutes ago
South Africa, 9 minutes ago
United States, 13 minutes ago
Recent Awards •
All
Popular Question to
vinayjrao
▴
250
Popular Question to
Yingying
•
0
Popular Question to
anasjamshed
▴
120
Popular Question to
synat.keam
▴
100
Popular Question to
Rui
▴
50
Popular Question to
otieno43
▴
20
Recent Replies
Comment: How to reduce the variation of CIBERSORTx results?
by
LChart
3.9k
First time I've heard of S-mode. I imagine you've seen this benchmark where it doesn't come out too well: https://academic.oup.com/bib/arti…
Comment: ISCN annotation for SV/CN VCF files
by
adedare
•
0
https://res.saletool.cn/vcf/18084521725806
Comment: ISCN annotation for SV/CN VCF files
by
adedare
•
0
https://res.saletool.cn/vcf/18084435127462
Comment: How can I solve this error?
by
22211020193
•
0
I want to conduct GWAS meta-analysis using metal software.
Comment: How to reduce the variation of CIBERSORTx results?
by
feather-W
•
0
Hi LChart,
Thanks for your reply. Yes, the identical command lines produce different results in CIBERSORTx S-mode. Although I input the da…
Comment: Removing duplicates
by
joe
▴
490
I *could* imagine an ONT scenario where you'd want to remove duplicates (amplicon-seq, etc) but likely for variant calling there is no need…
Comment: Removing duplicates
by
samuel.a.odonnell
▴
510
As above, you do not need to worry about duplicates for ONT data
Also have you looked at using other tools for variant calling more suited…
Answer: Pediococcus acidilactici sequence analysis
by
geneontologyhelp
▴
340
If you're looking for the GO annotations for *Pediococcus acidilactici*, these are available.
Using the instructions under [*2. All other…
Answer: What is the normalization status of metabric data?
by
etiennedanis
▴
10
I just found an answer to this question here:
[https://groups.google.com/g/cbioportal/c/hm_i4jbG1uc/m/h9rNYOvpAAAJ][1]
[1]: https://gro…
Comment: Removing duplicates
by
joe
▴
490
With ONT you will only have PCR duplicates. 'Read' (you mean optical?) duplicates are an artifact of cluster-based sequencing (ie Illumina)…
Comment: assembly using CCS, CLR, CCS_CLR sequences together?
by
GenoMax
141k
PacBio has some recommendations on software for genome assemblies on this page (which you may have seen but just in case): https://www.pacb…
Answer: DEG analysis of RNA-seq data across multiple tissues and two conditions
by
swbarnes2
14k
I would not put totally different tissues in the same DESeq object. I don't think that's going to do good things for normalization or disp…
Comment: Removing duplicates
by
quentinperriere
•
0
pcr duplicates or/and read duplicates
should I use this command to remove them ? or we don't talk about duplicates when dealing with ONT ??…
Comment: How to reduce the variation of CIBERSORTx results?
by
LChart
3.9k
If you didn't change the input signature matrix, the input RNA matrix, or the input parameters - what did you change? Is the statement that…
Answer: Inconsistency in SNP detection pipelines for multi-sample analysis
by
LChart
3.9k
> To replicate GVCF behavior and avoid issues with 0/0 genotypes appearing as missing, I don't use the -v option
I'm not sure what you m…
Traffic: 1973 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6