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0
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5
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701
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How long should the AAA... sequence be at the end of read, so that fastqc and multiqc consider it as poly- tail
multiqc fastqc polyA
updated 6 weeks ago by 22k • written 7 weeks ago by ▴ 50
0
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0
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388
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Nucleotide substitution model and neighbor-joining tree
phylogeny substitution mega neighbor-joining modeltest
8 months ago by poecile.pal ▴ 50
0
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0
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239
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TrN (df = k+5) and TrNe (df = k+2) - which of these Tamura-Nei model variants is used in MEGAx?
Tamura-Nei phylogeny phangorn modelTest mega
8 months ago by poecile.pal ▴ 50
0
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0
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446
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Comment: Comment: wrong quality plots in fastqc output
8 months ago by poecile.pal ▴ 50
0
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1
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446
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Comment: Comment: wrong quality plots in fastqc output
8 months ago by poecile.pal ▴ 50
2
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3
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446
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wrong quality plots in fastqc output
samtools fastqc fastq wgsim
updated 5 months ago by 41k • written 8 months ago by ▴ 50
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0
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819
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Comment: Comment: reference for freebayes or samtools mpileup after extracting chromosome from ali
8 months ago by poecile.pal ▴ 50
2
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3
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819
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reference for freebayes or samtools mpileup after extracting chromosome from alignment
samtools SNP alignment freebayes
updated 5 months ago by 41k • written 9 months ago by ▴ 50
0
votes
1
reply
542
views
Why 0/0 genotype refers to SNP and ALT != REF (in vcf file after freebayes)
genotype vcf freebayes SNP vcflib
9 months ago by poecile.pal ▴ 50
0
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0
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542
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Answer: Answer: Why 0/0 genotype refers to SNP and ALT != REF (in vcf file after freebayes)
9 months ago by poecile.pal ▴ 50
1
vote
0
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819
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Answer: Answer: reference for freebayes or samtools mpileup after extracting chromosome from ali
9 months ago by poecile.pal ▴ 50
1
vote
0
replies
958
views
Comment: Comment: How not to merge R1 and R2 pair-end files in multiqc report
9 months ago by poecile.pal ▴ 50
2
votes
4
replies
958
views
How not to merge R1 and R2 pair-end files in multiqc report
multiqc fastqc
9 months ago by poecile.pal ▴ 50
0
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0
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958
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Comment: Comment: How not to merge R1 and R2 pair-end files in multiqc report
9 months ago by poecile.pal ▴ 50
1
vote
1
reply
485
views
bwa: reads aligned concordantly exactly 1 time
bowtie2 samtools hisat2 alignment bwa
9 months ago by poecile.pal ▴ 50
1
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0
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485
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Answer: Answer: bwa: reads aligned concordantly exactly 1 time
9 months ago by poecile.pal ▴ 50
0
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0
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735
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Comment: Comment: hisat2-map error: "gzip: stdout: Broken pipe, (ERR): hisat2-align died with sign
11 months ago by poecile.pal ▴ 50
0
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2
replies
735
views
hisat2-map error: "gzip: stdout: Broken pipe, (ERR): hisat2-align died with signal 9 (KILL)"
fastq gzip hisat2
updated 6 months ago by 41k • written 12 months ago by ▴ 50
0
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0
replies
316
views
calculate meandepths for CDSs after mapping transcriptome reads to the genome
gtf samtools alignment sam
updated 5 months ago by 41k • written 16 months ago by ▴ 50
0
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0
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1.8k
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Comment: Comment: gtf file without exons
16 months ago by poecile.pal ▴ 50
0
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1
reply
1.8k
views
Comment: Comment: gtf file without exons
16 months ago by poecile.pal ▴ 50
0
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1
reply
1.8k
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Comment: Comment: gtf file without exons
16 months ago by poecile.pal ▴ 50
0
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1
reply
1.8k
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Comment: Comment: gtf file without exons
16 months ago by poecile.pal ▴ 50
0
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1
reply
1.8k
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Comment: Comment: gtf file without exons
16 months ago by poecile.pal ▴ 50
4
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10
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1.8k
views
gtf file without exons
gtf exons annotation augustus hisat2
updated 16 months ago by ★ 1.3k • written 16 months ago by ▴ 50
0
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0
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905
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Comment: Comment: SNP annotation for de novo transcriptome data
20 months ago by poecile.pal ▴ 50
0
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0
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23k
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Comment: Comment: How To Extract Reads-Pairs Aligned Concordantly Exactly 1 Time?
21 months ago by poecile.pal ▴ 50
0
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1
reply
23k
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Comment: Comment: How To Extract Reads-Pairs Aligned Concordantly Exactly 1 Time?
21 months ago by poecile.pal ▴ 50
0
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0
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278
views
GATK workflow for de novo transcriptome assembly of non-model organism
transcriptome GATK SNP samtools non-model-organism
updated 5 months ago by 41k • written 21 months ago by ▴ 50
2
votes
2
replies
798
views
Using transdecoder to filter a fasta file with preserving whole transcripts
transcriptome assembly rna-seq fasta transdecoder
updated 21 months ago by 21k • written 21 months ago by ▴ 50
2
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1
reply
798
views
Answer: Answer: Using transdecoder to filter a fasta file with preserving whole transcripts
21 months ago by poecile.pal ▴ 50
0
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1
reply
988
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Comment: Comment: Extract the longest isoform from transcripts.fasta (rnaSPAdes output)
21 months ago by poecile.pal ▴ 50
0
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0
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988
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Comment: Comment: Extract the longest isoform from transcripts.fasta (rnaSPAdes output)
21 months ago by poecile.pal ▴ 50
5
votes
5
replies
988
views
Extract the longest isoform from transcripts.fasta (rnaSPAdes output)
transcriptome isoform assembly rna-seq fasta
updated 21 months ago by ▴ 710 • written 21 months ago by ▴ 50
1
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1
reply
405
views
rnaSPAdes hybrid assembly and YAML file
SPAdes assembly rnaSPAdes rna-seq hybrid
21 months ago by poecile.pal ▴ 50
0
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0
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405
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Answer: Answer: rnaSPAdes hybrid assembly and YAML file
21 months ago by poecile.pal ▴ 50
0
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0
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1.4k
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Comment: Comment: collapseReplicates in DESeq2 when the number of technical replicates per biosamp
2.1 years ago by poecile.pal ▴ 50
0
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1
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1.4k
views
Comment: Comment: collapseReplicates in DESeq2 when the number of technical replicates per biosamp
2.1 years ago by poecile.pal ▴ 50
3
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4
replies
1.4k
views
collapseReplicates in DESeq2 when the number of technical replicates per biosample is different
collapseReplicates DESeq2 RNASeq expression DEG
2.1 years ago by poecile.pal ▴ 50
0
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0
replies
422
views
Tools for the reconstruction of demographic history from genome sequences FOR POLYPLOIDS
MSMC SMC demographics genome polyploids
2.2 years ago by poecile.pal ▴ 50
0
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0
replies
415
views
Download intergenic spacers between specific genes for all findings in genbank
seqinr R genbank search phylogeny
2.2 years ago by poecile.pal ▴ 50
0
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0
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1.3k
views
Comment: Comment: DRIMSeq with more than 2 categories in the group
2.2 years ago by poecile.pal ▴ 50
0
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0
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1.3k
views
Comment: Comment: DRIMSeq with more than 2 categories in the group
2.2 years ago by poecile.pal ▴ 50
1
vote
5
replies
3.1k
views
Problems with installing adegenet
R error software adegenet gene
2.6 years ago by poecile.pal ▴ 50
0
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0
replies
3.1k
views
Answer: Answer: Problems with installing adegenet
2.6 years ago by poecile.pal ▴ 50
0
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0
replies
3.1k
views
Comment: Comment: Problems with installing adegenet
2.6 years ago by poecile.pal ▴ 50
0
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0
replies
3.1k
views
Comment: Comment: Problems with installing adegenet
2.6 years ago by poecile.pal ▴ 50
0
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0
replies
1.3k
views
Comment: C: Trying to get sequence using sequinr generates error "Error in readLines(socket,
2.8 years ago by poecile.pal ▴ 50
1
vote
2
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1.3k
views
Trying to get sequence using sequinr generates error "Error in readLines(socket, n = nelem, ok = FALSE)"
gene software error sequence R genome
2.8 years ago by poecile.pal ▴ 50
0
votes
4
replies
1.3k
views
DRIMSeq with more than 2 categories in the group
RNA-Seq R software error
2.2 years ago by poecile.pal ▴ 50
55 results • Page 1 of 2
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