User: Raghav

gravatar for Raghav
Raghav100
Reputation:
100
Status:
Trusted
Location:
Allahabad, India
Last seen:
4 years, 6 months ago
Joined:
6 years, 5 months ago
Email:
r******************@gmail.com

about me

Posts by Raghav

<prev • 72 results • page 1 of 8 • next >
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Comment: C: filtering paired end mapped reads form SAM/BAM file
... Thank you Sir for your kind reply confusion: 46641928 + 0 with itself and mate mapped 168844 + 0 with mate mapped to a different chr 145423 + 0 with mate mapped to a different chr (mapQ>=5) how to interpret these lines . ...
written 4.6 years ago by Raghav100
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filtering paired end mapped reads form SAM/BAM file
... Dear All, I performed paired end mapping of transcriptome reads (genrated on illumina platform) by bowtie2. after mapping I used Samtools for calculation of mapping statistics by using samtools flagstat. and output is 68714536 + 0 in total (QC-passed reads + QC-failed reads) 0 + 0 duplicates 545 ...
bowtie2 paired end maping sam bam written 4.6 years ago by Raghav100 • updated 4.6 years ago by Devon Ryan88k
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Comment: C: how to fetch match string by comparing two files by using Shell or python
... I have got your point. thank you Sir ...
written 4.6 years ago by Raghav100
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Comment: C: how to fetch match string by comparing two files by using Shell or python
... Dear Sir,  This is not directly related to bioinformatics. ...
written 4.6 years ago by Raghav100
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(Closed) how to fetch match string by comparing two files by using Shell or python
... Dear All, I need your help to correct me. I have tow files named unique.txt and Total.txt. unique.txt file contain two columns each columns are seprated by tab. Total.txt file contain: 3 colums each column seprated by tab. what i do, take each rows from unique.txt file find that in total.txt fil ...
shell programming python written 4.6 years ago by Raghav100
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How to draw such break figure
... Dear All, I want to draw a figure like posted bellow, Main problem is how to create break point in particular bin of histogram,  ...
figure written 4.7 years ago by Raghav100
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Comment: C: how many number of elements have a value greater than x and less than y
... snp position start end output 2 1 6 3 4 1 3 1 5 7 10 2 8 10 20 0 9 1000 20000 0 In the above example there are three values from column (2,4,5) fall in between 1 and 6 (1st value of 2nd ...
written 4.7 years ago by Raghav100
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how many number of elements have a value greater than x and less than y
... Dear All,   I need help retrieve information from the given table SNP position start end 98151697 98151197 98152197 98135534 98135034 98136034 98144183 98143683 98144683 98144239 98143739 98144739 98144334 98143 ...
elements greater than less than written 4.7 years ago by Raghav100 • updated 4.7 years ago by Alex Reynolds27k
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Comment: C: how to visualize the bedgraph and bed file
... Dear Kizuna, At ucsc browser, i am unable to customize TAIR 10 (for Arabidopsis thaliana) may it is not located at UCSC browser. but thank you for the effort  ...
written 4.8 years ago by Raghav100
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how to visualize the bedgraph and bed file
... I have generated bedgraph and bed files for the visualization. But I am unable to visualize it in WASHU browser. It would be very helpful if anyone could help me to guide step by step to upload and visualize. I am using TAIR10 as a reference. I want to visualize my bed file and bedgraph file over t ...
bedgraph bed fil written 4.8 years ago by Raghav100 • updated 4.8 years ago by Alex Reynolds27k

Latest awards to Raghav

Popular Question 4.7 years ago, created a question with more than 1,000 views. For Error Regarding Bowtie2 Run
Popular Question 4.8 years ago, created a question with more than 1,000 views. For Error Regarding Bowtie2 Run
Popular Question 4.8 years ago, created a question with more than 1,000 views. For Error Regarding Bowtie2 Run
Supporter 5.4 years ago, voted at least 25 times.

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