User: harshraje19
harshraje19 • 10
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Posts by harshraje19
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... ok ... Thank you Asaf ...
written 2 days ago by
harshraje19 • 10
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... Ok. Thank you. I will try ...
written 3 days ago by
harshraje19 • 10
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... i have small RNA seq data. I want to find out the miRNAs.
The genome of that plant is available but miRNAs are not annotated and no miRNAs in mirbase database.
I want to go for de novo prediction of miRNAs. ...
written 3 days ago by
harshraje19 • 10
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... Dear All,
I am performing the miRNA prediction analysis. I am working on plant and genome of that plant species is available but miRNA sequence file is not there in mirbase. So I cannot predict the mirnas using miRDeep2 (I guess).
Can anyone suggest me any alternative pipeline for de novo predicti ...
written 3 days ago by
harshraje19 • 10
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... Hi, I have run this perl command in mirdeep2_pa folder many times but still it is giving error. ...
written 5 days ago by
harshraje19 • 10
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... Dear all,
Happy new year 2020.
I am performing the small RNA seq data analysis and I want to find the miRNAs in my data using the miRDeep2.
I have indexed my genome successfully using the command bowtie-build genome.fa genome
But when I run the command
mapper.pl control1.fastq -c -j -l 18 ...
written 7 days ago by
harshraje19 • 10
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Comment:
A: Error in Cuffdiff
... I still have similar error as
Warning: Could not connect to update server to verify current version. Please check at the Cufflinks website (http://cufflinks.cbcb.umd.edu).
terminate called after throwing an instance of 'std::__ios_failure'
what(): basic_filebuf::underflow error reading the file ...
written 15 days ago by
harshraje19 • 10
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... Dear friends,
I got following warning/error after running the cuffdiff. can anyone help to solve this error.
Command is written above the warning/erro
Thanks
harshraj@harshraj-XPS-8930:~/ArabidopsisExpt$ cuffdiff -o Cuffdiff_out -u cuffmerge_out/merged.gtf control1_thout/accepted_hits.bam, c ...
written 16 days ago by
harshraje19 • 10
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... I am working on grapevine whose genome is recently available. So, I will be mapping my reads to genome. (It is reference based).
I will be mainly checking the differential gene expression analysis at different different time points.
which is the most advanced pipeline these days? can anyone sugges ...
written 20 days ago by
harshraje19 • 10
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... Can anyone suggest me the recent and best pipeline for RNA-Seq data analysis. Specially for plants ...
written 21 days ago by
harshraje19 • 10
• updated
21 days ago by
dsull • 820
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