User: harshraje19

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harshraje1910
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Posts by harshraje19

<prev • 13 results • page 1 of 2 • next >
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Comment: C: Can anyone suggest me the pipeline for de novo prediction of miRNAs?
... ok ... Thank you Asaf ...
written 2 days ago by harshraje1910
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Comment: A: Can anyone suggest me the pipeline for de novo prediction of miRNAs?
... Ok. Thank you. I will try ...
written 3 days ago by harshraje1910
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Comment: A: Can anyone suggest me the pipeline for de novo prediction of miRNAs?
... i have small RNA seq data. I want to find out the miRNAs. The genome of that plant is available but miRNAs are not annotated and no miRNAs in mirbase database. I want to go for de novo prediction of miRNAs. ...
written 3 days ago by harshraje1910
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Can anyone suggest me the pipeline for de novo prediction of miRNAs?
... Dear All, I am performing the miRNA prediction analysis. I am working on plant and genome of that plant species is available but miRNA sequence file is not there in mirbase. So I cannot predict the mirnas using miRDeep2 (I guess). Can anyone suggest me any alternative pipeline for de novo predicti ...
assembly next-gen sequence rna-seq written 3 days ago by harshraje1910
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Comment: A: miRDeep2- mapper problem with perl install.pl installation?
... Hi, I have run this perl command in mirdeep2_pa folder many times but still it is giving error. ...
written 5 days ago by harshraje1910
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miRDeep2- mapper problem with perl install.pl installation?
... Dear all, Happy new year 2020. I am performing the small RNA seq data analysis and I want to find the miRNAs in my data using the miRDeep2. I have indexed my genome successfully using the command bowtie-build genome.fa genome But when I run the command mapper.pl control1.fastq -c -j -l 18 ...
software error next-gen alignment rna-seq written 7 days ago by harshraje1910
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Comment: A: Error in Cuffdiff
... I still have similar error as Warning: Could not connect to update server to verify current version. Please check at the Cufflinks website (http://cufflinks.cbcb.umd.edu). terminate called after throwing an instance of 'std::__ios_failure' what(): basic_filebuf::underflow error reading the file ...
written 15 days ago by harshraje1910
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Error in Cuffdiff
... Dear friends, I got following warning/error after running the cuffdiff. can anyone help to solve this error. Command is written above the warning/erro Thanks harshraj@harshraj-XPS-8930:~/ArabidopsisExpt$ cuffdiff -o Cuffdiff_out -u cuffmerge_out/merged.gtf control1_thout/accepted_hits.bam, c ...
software error next-gen rna-seq sequencing written 16 days ago by harshraje1910
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(Closed) Can anyone suggest me the recent and best pipeline for RNA-Seq data analysis
... I am working on grapevine whose genome is recently available. So, I will be mapping my reads to genome. (It is reference based). I will be mainly checking the differential gene expression analysis at different different time points. which is the most advanced pipeline these days? can anyone sugges ...
rna-seq written 20 days ago by harshraje1910
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Can anyone suggest me the recent and best pipeline for RNA-Seq data analysis
... Can anyone suggest me the recent and best pipeline for RNA-Seq data analysis. Specially for plants ...
rna-seq written 21 days ago by harshraje1910 • updated 21 days ago by dsull820

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