User: harshraje19

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harshraje1920
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Posts by harshraje19

<prev • 38 results • page 2 of 4 • next >
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Comment: C: Differential gene expression analysis problem in EDGE R?
... WOW. It is working after changing the group factor to group=factor(c(rep(1,3),rep(2,3))) Thank you very much Raj ...
written 29 days ago by harshraje1920
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Comment: C: Differential gene expression analysis problem in EDGE R?
... Oh then it was my mistake then, then should be group=factor(c(rep(1,3),rep(2,3))) right?? ...
written 29 days ago by harshraje1920
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Comment: C: PCA for multiple transcriptome-assemblies
... I have gene count data for PCA analysis, can you suggest the pipeline in R for the PCA analysis ...
written 29 days ago by harshraje1920
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Comment: C: Differential gene expression analysis problem in EDGE R?
... This is my colnames(Counts) colnames(Counts)<-paste("P",c(81,87,92,97,103,83),sep = "") ...
written 29 days ago by harshraje1920
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Comment: A: Differential gene expression analysis problem in EDGE R?
... Actually I am performing the DEG in combine, but it is giving following error library(edgeR) Counts<- read.table("m1.txt",sep = "\t",stringsAsFactors = F,row.names = 1) colnames(Counts)<-paste("P",c(81,87,92,97,103,83),sep = "") deg_list <- DGEList(counts=Counts, ge ...
written 4 weeks ago by harshraje1920 • updated 29 days ago by ATpoint31k
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Differential gene expression analysis problem in EDGE R?
... Dear all, I have performed the small RNA sequencing and I found 4000 known miRNAs and 35 novel miRNAs. But when I am performing the EDGE R test in R-studio it is working for known miRNAs but not working for novel miRNAs, is it because of their numbers are less? and also error is null hypothesis C ...
gene R rna-seq software error written 4 weeks ago by harshraje1920
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Comment: C: How to perform the correlation analysis between gene counts (generated from RNA-
... I have three sample 1) Control 2) Drought 3) Heat Do you have any specific suggestion on this? ...
written 5 weeks ago by harshraje1920
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How to perform the correlation analysis between gene counts (generated from RNA-Seq) and plant physiological data?
... Hello everyone, I have performed the physiological analysis in plants and, I have calculated the leaf temperature and stomatal conductance and at the same time I have performed the RNA-Seq of same plant at same time. Now, I want to compare how the physiological data and transcriptome data, that ho ...
gene R rna-seq written 5 weeks ago by harshraje1920
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Comment: C: Can anyone suggest me the tool to convert the gene ids to gene names?
... This is working great. Thank you very much ...
written 6 weeks ago by harshraje1920
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Can anyone suggest me the tool to convert the gene ids to gene names?
... After performing the Ht-seq count, i got following gene ids, VIT_04s0023g03690 51 53 48 52 VIT_04s0023g03700 28 19 25 16 VIT_04s0023g03710 14 12 11 14 VIT_04s0023g03720 2 1 4 3 VIT_04s0023g03730 0 0 0 0 VIT_04s0023g03740 2 0 0 0 VIT_04s0023g03750 17 20 25 23 I want to ...
gene sequence alignment written 6 weeks ago by harshraje1920 • updated 6 weeks ago by Kevin Blighe56k

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Scholar 19 days ago, created an answer that has been accepted. For A: Error in demultiplexing of GBS data using GBSX_v1.3.jar

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