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Answer: Answer: Snakemake alignment script
10 weeks ago by dariober 14k
1
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1
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348
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Answer: Answer: Error in snakemake with working shell script
3 months ago by dariober 14k
0
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1
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1.1k
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Answer: Answer: how to run FacetsSuite wrapper scripts on command line
6 months ago by dariober 14k
4
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0
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3.7k
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Answer: Answer: I want to correct the erroneous barcode file, and the Python code that I've writ
7 months ago by dariober 14k
5
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1
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2.1k
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Answer: Answer: How to use CAFE from Orthofinder Results
9 months ago by dariober 14k
1
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1
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1.5k
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Answer: Answer: GSEA on nonmodel organisms
10 months ago by dariober 14k
0
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1
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577
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Answer: Answer: How to obtain highest level GO term from go_id?
10 months ago by dariober 14k
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0
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1.4k
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Answer: Answer: VEP with CONDA, installing annotation sources manually, what is the right direct
11 months ago by dariober 14k
0
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0
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849
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Answer: Answer: How to install non-bioconda package in conda environment
11 months ago by dariober 14k
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1
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2.4k
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Answer: Answer: Processing Fast5 files from ONT
11 months ago by dariober 14k
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0
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330
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Answer: Answer: How can I identify housekeeping genes from scRNA-seq data?
12 months ago by dariober 14k
0
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0
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747
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Answer: Answer: How interpret question mark symbol strand column in GFF file?
12 months ago by dariober 14k
1
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2
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747
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Answer: Answer: Graphic representation of distance between samples
12 months ago by dariober 14k
1
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1
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1.1k
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Answer: Answer: how to specify a specific conda environment in a specific rule with snakemake?
13 months ago by dariober 14k
1
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0
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497
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Answer: Answer: Comparing groups with makeContrast in edgeR
13 months ago by dariober 14k
2
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0
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477
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Answer: Answer: How to extract min and max values of a gene from different columns
13 months ago by dariober 14k
2
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0
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700
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Answer: Answer: SnakeMake: MissingRuleException
13 months ago by dariober 14k
4
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1
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500
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Answer: Answer: How to calculate effect size between two gene sets?
14 months ago by dariober 14k
2
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1
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1.5k
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Answer: Answer: Can we use UMAP clustering on bulk data?
14 months ago by dariober 14k
2
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0
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769
views
Answer: Answer: Remove NA from file while reading
14 months ago by dariober 14k
1
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1
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444
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Answer: Answer: CNA calling in mouse tumor-normal WGS
15 months ago by dariober 14k
3
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2
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1.4k
views
Answer: Answer: bcftools split-vep -- how to split the INFO column up and also assign the ensemb
15 months ago by dariober 14k
1
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1
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720
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Answer: Answer: Distinguishing records for reads in a pair in a SAM file
16 months ago by dariober 14k
2
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0
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2.2k
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Answer: Answer: Write SAM file manually with pysam
17 months ago by dariober 14k
1
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1
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1.4k
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Answer: Answer: How can I biuld to pipeline in nextflow to download SRA files?
17 months ago by dariober 14k
1
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0
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697
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Answer: Answer: Rapid lookup of barcodes
17 months ago by dariober 14k
1
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0
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1.2k
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Answer: Answer: blast: error while reading seqid using ncbi database
17 months ago by dariober 14k
1
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0
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3.4k
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Answer: Answer: How to parallelise a for loop in bash?
18 months ago by dariober 14k
0
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1
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1.6k
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Answer: Answer: snakemake error - one of the commands exited with non-zero exit code
19 months ago by dariober 14k
0
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1
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1.1k
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Answer: Answer: Issue with trend line and confidence interval
19 months ago by dariober 14k
2
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1
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1.3k
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Answer: Answer: snakemake workflow
19 months ago by dariober 14k
2
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1
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1.3k
views
Answer: Answer: Running bash script from PATH automatically logging into the server
19 months ago by dariober 14k
1
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2
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1.7k
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Answer: Answer: fastp snakemake
19 months ago by dariober 14k
1
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0
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617
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Answer: Answer: The Biostar Herald for Tuesday, March 22, 2022
20 months ago by dariober 14k
1
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2
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1.2k
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Answer: Answer: BAM > featurecount > DEseq2 Nextflow/Snakemake pipeline
21 months ago by dariober 14k
0
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1
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548
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Answer: Answer: pysam rewrite help
21 months ago by dariober 14k
0
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1
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1.5k
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Answer: Answer: Linear regression on RNA-seq data
21 months ago by dariober 14k
0
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1
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3.3k
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Answer: Answer: Install GATK4 and its dependencies on remote server without root privilege
21 months ago by dariober 14k
0
votes
0
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1.1k
views
Answer: Answer: MD5Sums of fastq files from SRA
21 months ago by dariober 14k
1
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1
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1.3k
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Answer: Answer: Does the absence of BAI file just cause an algorithm to run slower or would it a
21 months ago by dariober 14k
0
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1
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1.4k
views
Answer: Answer: Snakemake error in bwahaha pipeline
22 months ago by dariober 14k
2
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1
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752
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Answer: Answer: Snakemake error
22 months ago by dariober 14k
2
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1
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1.6k
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Answer: Answer: Executing snakemake array jobs on cluster
22 months ago by dariober 14k
0
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1
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1.0k
views
Answer: Answer: How does BWA handle duplications?
22 months ago by dariober 14k
1
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1
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921
views
Answer: Answer: UMItools dedup deduplication taking too much time + RAM
22 months ago by dariober 14k
0
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1
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1.2k
views
Answer: Answer: bamCoverage not generating BigWig output file when using for loop
22 months ago by dariober 14k
2
votes
1
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843
views
Answer: Answer: Prefetch and Snakemake compatibility issue
23 months ago by dariober 14k
0
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0
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713
views
Answer: Answer: Performing one-sample t-tests with limma
2.0 years ago by dariober 14k
2
votes
0
replies
5.6k
views
Answer: Answer: Gzip output of fasterq-dump
2.0 years ago by dariober 14k
4
votes
0
replies
803
views
Answer: Answer: to grep pattern
2.1 years ago by dariober 14k
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