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55
votes
11
replies
50k
views
When and why is bwa aln better then bwa mem?
aln comparison bwa mem
6 weeks ago by dariober 15k
5
votes
3
replies
1.3k
views
Strand bias in supplementary alignments from Nanopore
minimap2 nanopore strand
updated 19 months ago by ★ 4.2k • written 19 months ago by 15k
1
vote
3
replies
1.7k
views
How ensembl assigns parent GO terms and its consequence on GO analysis
gsea ensembl fgsea biomart go
updated 2.7 years ago by ▴ 470 • written 2.7 years ago by 15k
1
vote
1
reply
1.9k
views
blast: error while reading seqid using ncbi database
ncbi blast
2.9 years ago by dariober 15k
13
votes
10
replies
6.4k
views
Make bam index human readable
bam index bai
updated 2.9 years ago by 45k • written 9.4 years ago by 15k
8
votes
9
replies
6.0k
views
Corrupted bam file
samtools bwa bam
updated 3.5 years ago by 45k • written 10.8 years ago by 15k
5
votes
2
replies
1.5k
views
Mutate protein sequence according to HGVS
HGVS protein fasta
updated 6.0 years ago by 24k • written 6.0 years ago by 15k
2
votes
4
replies
3.2k
views
F-seq output: Meaning of bed columns
F-Seq fseq peak-calling
updated 3.4 years ago by 45k • written 10.7 years ago by 15k
15
votes
9
replies
3.6k
views
6 follow
Survey: What colour theme do you use in your terminal?
terminal color theme
updated 6.3 years ago by 11k • written 8.2 years ago by 15k
5
votes
4
replies
3.2k
views
Access array in bcftools
bcftools view expression
6.8 years ago by dariober 15k
1
vote
4
replies
1.6k
views
biostars.org: Search capped to 50 hits?
meta biostars
updated 2.2 years ago by 45k • written 8.3 years ago by 15k
7
votes
9
replies
3.1k
views
Java code for indexing fasta file
Java fasta index
8.5 years ago by dariober 15k
1
vote
3
replies
3.3k
views
Inconsistent GTF from UCSC browser vs genePredToGtf
GTF genePredToGtf UCSC
9.1 years ago by dariober 15k
2
votes
4
replies
2.8k
views
Corrupted tabix index?
tabix htsjdk java
updated 2.9 years ago by 45k • written 9.5 years ago by 15k
4
votes
7
replies
2.4k
views
Assessing diversity of random oligonucleotides
sequence kmer random oligonucleotides
updated 2.7 years ago by 45k • written 10.0 years ago by 15k
2
votes
6
replies
7.4k
views
Mark duplicates for single end reads: Why only 5'end?
Read duplicates MarkDuplicates 5' 3'end
10.1 years ago by dariober 15k
0
votes
1
reply
3.6k
views
Expected number of read duplicates
read duplication statistics
updated 10.4 years ago by 105k • written 10.4 years ago by 15k
12
votes
7
replies
14k
views
Add read group to header after samtools merge
samtools read-group merge
updated 3.3 years ago by 45k • written 10.5 years ago by 15k
10
votes
5
replies
6.9k
views
Are ENA and SRA archives in sync?
sra ena NGS
updated 3.4 years ago by 45k • written 10.6 years ago by 15k
5
votes
7
replies
5.3k
views
markDuplicates: Histogram not produced
picard markDuplicates
updated 3.4 years ago by 45k • written 10.7 years ago by 15k
33
votes
14
replies
16k
views
11 follow
ChIP-Seq: Calling peaks with replicates
ChIP-Seq
updated 3.4 years ago by 45k • written 10.7 years ago by 15k
2
votes
2
replies
4.7k
views
Why "No real operator (M|I|D|N)" in picard?
picard cigar
updated 3.6 years ago by 45k • written 11.0 years ago by 15k
2
votes
2
replies
3.5k
views
Picard API: Modify sam header
Picard java
updated 3.7 years ago by 45k • written 11.1 years ago by 15k
0
votes
2
replies
3.0k
views
Java Samtools Api: Write Bam To Stdout
java picard samtools
updated 11.2 years ago by 166k • written 11.2 years ago by 15k
24 results • Page 1 of 1
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