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2
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344
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Comment: Comment: How to Split 3000 WGS CRAM files into 1Mbp length chunks
6 days ago by cmdcolin ★ 3.0k
1
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1
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344
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Answer: Answer: How to Split 3000 WGS CRAM files into 1Mbp length chunks
4 days ago by cmdcolin ★ 3.0k
2
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1
reply
243
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Answer: Answer: interpreting inversions on IGV
7 days ago by cmdcolin ★ 3.0k
0
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0
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411
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Answer: Answer: Fast BAM header editing
11 days ago by cmdcolin ★ 3.0k
0
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0
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308
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Comment: Comment: Haplotype specific alleles
13 days ago by cmdcolin ★ 3.0k
0
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2
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308
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Answer: Answer: Haplotype specific alleles
14 days ago by cmdcolin ★ 3.0k
0
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0
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433
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Comment: Comment: How to convert chromosome locations to gene symbols?
17 days ago by cmdcolin ★ 3.0k
1
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0
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491
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Comment: Comment: How to efficiently/quickly merge ~500k vcfs?
20 days ago by cmdcolin ★ 3.0k
0
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0
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302
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Comment: Comment: The Biostar Herald for Monday, May 01, 2023
27 days ago by cmdcolin ★ 3.0k
0
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0
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340
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Comment: Comment: Is my estimated genome coverage correct?
29 days ago by cmdcolin ★ 3.0k
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0
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3.3k
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Comment: Comment: Finding Pdb File For Specific Transcript
6 weeks ago by cmdcolin ★ 3.0k
0
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1
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459
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Answer: Answer: Detecting heterozygous deletions in NGS sequence data
7 weeks ago by cmdcolin ★ 3.0k
0
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0
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317
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Comment: Comment: Error parsing strand (?) from GFF line
8 weeks ago by cmdcolin ★ 3.0k
0
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1
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485
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Comment: Comment: RNA Sequencing and Vg pan -transcriptome build
9 weeks ago by cmdcolin ★ 3.0k
1
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1
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876
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Comment: Comment: How to perform synteny alignments and plots only with a gene?
10 weeks ago by cmdcolin ★ 3.0k
2
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1
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876
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Answer: Answer: How to perform synteny alignments and plots only with a gene?
10 weeks ago by cmdcolin ★ 3.0k
0
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0
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495
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Comment: Comment: How to remove homozygous reference genotypes from multi-sample vcf file based on
10 weeks ago by cmdcolin ★ 3.0k
0
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1
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495
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Comment: Comment: How to remove homozygous reference genotypes from multi-sample vcf file based on
10 weeks ago by cmdcolin ★ 3.0k
0
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1
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495
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Answer: Answer: How to remove homozygous reference genotypes from multi-sample vcf file based on
10 weeks ago by cmdcolin ★ 3.0k
2
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0
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379
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Answer: Answer: How to create a graph that shows pairwise Fst values at single SNP loci across t
10 weeks ago by cmdcolin ★ 3.0k
4
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1
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635
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Answer: Answer: Realigning BAM files to new reference
11 weeks ago by cmdcolin ★ 3.0k
0
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1
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387
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Comment: Comment: what does total count mean at a location in IGV
11 weeks ago by cmdcolin ★ 3.0k
2
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1
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1.0k
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Answer: Answer: Rust bioinformatics projects ideas
12 weeks ago by cmdcolin ★ 3.0k
0
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1
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403
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Answer: Answer: Alternatives to Lollipop for virus variant data
3 months ago by cmdcolin ★ 3.0k
0
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0
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74k
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Comment: Comment: How to Install SamTools, HTSLib, and BCFTools on Ubuntu 18.04
3 months ago by cmdcolin ★ 3.0k
0
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0
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287
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Comment: Comment: Visualize variants and percentage of variants from one sample of Amplicon Seq da
3 months ago by cmdcolin ★ 3.0k
5
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0
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312
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Tool: BAM index visualizer - a tool for helping to understand the BAI file format
bam
3 months ago by cmdcolin ★ 3.0k
4
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1
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475
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Answer: Answer: Gviz python alternative
4 months ago by cmdcolin ★ 3.0k
1
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0
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869
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Comment: Comment: Mapping a small number of contigs to a reference subsequence
4 months ago by cmdcolin ★ 3.0k
0
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2
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983
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Comment: Comment: bedGraph to bigwig
4 months ago by cmdcolin ★ 3.0k
3
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1
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869
views
Answer: Answer: Mapping a small number of contigs to a reference subsequence
4 months ago by cmdcolin ★ 3.0k
0
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1
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409
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Answer: Answer: Program to View Average Coverage with Variance of BAM/Bigwig Files?
4 months ago by cmdcolin ★ 3.0k
0
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0
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482
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Comment: Comment: JBrowse on GitHub (A question about file size)
4 months ago by cmdcolin ★ 3.0k
2
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1
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482
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Answer: Answer: JBrowse on GitHub (A question about file size)
4 months ago by cmdcolin ★ 3.0k
0
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0
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1.3k
views
Answer: Answer: How to create a dotplot like this for GSEA analysis from DNA methylation data (C
4 months ago by cmdcolin ★ 3.0k
0
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0
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561
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Comment: Comment: Extract alignment in fasta format from BAM/SAM file
4 months ago by cmdcolin ★ 3.0k
0
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0
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719
views
Comment: Comment: Get length of the alignment from bam file with shell
4 months ago by cmdcolin ★ 3.0k
3
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1
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608
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Answer: Answer: How to calculate coverage of Nanopore long read data?
4 months ago by cmdcolin ★ 3.0k
0
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0
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798
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Comment: Comment: batch sequence retrieval using exon coordinates
4 months ago by cmdcolin ★ 3.0k
0
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0
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593
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Comment: Comment: remove CIGAR strings starting with insertion
updated 5 months ago by 39k • written 5 months ago by ★ 3.0k
3
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1
reply
593
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Answer: Answer: remove CIGAR strings starting with insertion
5 months ago by cmdcolin ★ 3.0k
0
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1
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498
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Comment: Comment: Gene location of both inherited gene
5 months ago by cmdcolin ★ 3.0k
3
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1
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498
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Answer: Answer: Gene location of both inherited gene
5 months ago by cmdcolin ★ 3.0k
0
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0
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934
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Comment: Comment: find the mate of a read using pysam
5 months ago by cmdcolin ★ 3.0k
0
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1
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934
views
Comment: Comment: find the mate of a read using pysam
5 months ago by cmdcolin ★ 3.0k
1
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1
reply
2.0k
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Comment: Comment: pyCirclize - Circular visualization in Python
5 months ago by cmdcolin ★ 3.0k
0
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0
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38k
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Comment: Comment: Difference Between "Mate Pair" And "Pair-End"
5 months ago by cmdcolin ★ 3.0k
0
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1
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606
views
Comment: Comment: How is p-value calculated in MACS2
5 months ago by cmdcolin ★ 3.0k
1
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1
reply
606
views
Answer: Answer: How is p-value calculated in MACS2
5 months ago by cmdcolin ★ 3.0k
1
vote
1
reply
13k
views
Comment: Comment: What are Supplementary Reads?
5 months ago by cmdcolin ★ 3.0k
421 results • Page 1 of 9
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