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251
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Comment:
Comment: Load a full GFF3 into annotation track using arrow (Apollo)
10 hours ago by
cmdcolin
★ 3.8k
1
vote
0
replies
301
views
Comment:
Comment: Best genome browser for manual curation of gene structure(s)?
7 days ago by
cmdcolin
★ 3.8k
3
votes
1
reply
301
views
Answer:
Answer: Best genome browser for manual curation of gene structure(s)?
8 days ago by
cmdcolin
★ 3.8k
0
votes
1
reply
459
views
Answer:
Answer: Is it possible to set different tracks to the same scale in JBrowse
8 days ago by
cmdcolin
★ 3.8k
0
votes
0
replies
544
views
Comment:
Comment: Can any JBrowse2 tracks show multiple colors for reads at different nucleotide p
17 days ago by
cmdcolin
★ 3.8k
0
votes
1
reply
544
views
Comment:
Comment: Can any JBrowse2 tracks show multiple colors for reads at different nucleotide p
17 days ago by
cmdcolin
★ 3.8k
1
vote
1
reply
544
views
Comment:
Comment: Can any JBrowse2 tracks show multiple colors for reads at different nucleotide p
17 days ago by
cmdcolin
★ 3.8k
1
vote
1
reply
544
views
Comment:
Comment: Can any JBrowse2 tracks show multiple colors for reads at different nucleotide p
17 days ago by
cmdcolin
★ 3.8k
1
vote
0
replies
273
views
Comment:
Comment: Forgot the web site with comparison of NGS platforms
19 days ago by
cmdcolin
★ 3.8k
1
vote
1
reply
544
views
Comment:
Comment: Can any JBrowse2 tracks show multiple colors for reads at different nucleotide p
20 days ago by
cmdcolin
★ 3.8k
0
votes
1
reply
261
views
Comment:
Comment: comparing VCF files
23 days ago by
cmdcolin
★ 3.8k
0
votes
0
replies
1.6k
views
Comment:
Comment: How to calculate coverage of Nanopore long read data?
5 weeks ago by
cmdcolin
★ 3.8k
2
votes
0
replies
253
views
Answer:
Answer: gene alignment (microsynteny)
7 weeks ago by
cmdcolin
★ 3.8k
0
votes
1
reply
579
views
Answer:
Answer: hg38 goldenPath cpgIsland is down?
10 weeks ago by
cmdcolin
★ 3.8k
1
vote
1
reply
241
views
Comment:
Comment: How can I view the information in an alternative allele?
11 weeks ago by
cmdcolin
★ 3.8k
2
votes
0
replies
347
views
Answer:
Answer: Impossible gene fusion annotations
11 weeks ago by
cmdcolin
★ 3.8k
0
votes
0
replies
537
views
Comment:
Comment: How to visualize multiple bacterial genomes with circos?
12 weeks ago by
cmdcolin
★ 3.8k
0
votes
1
reply
405
views
Comment:
Comment: Querying nr_clustered database using BLAST REST API?
12 weeks ago by
cmdcolin
★ 3.8k
0
votes
1
reply
405
views
Comment:
Comment: Querying nr_clustered database using BLAST REST API?
12 weeks ago by
cmdcolin
★ 3.8k
1
vote
5
replies
405
views
Querying nr_clustered database using BLAST REST API?
blast
clustered
updated 11 weeks ago by
GenoMax
141k • written 12 weeks ago by
cmdcolin
★ 3.8k
0
votes
0
replies
2.9k
views
Comment:
Comment: How to get RID from blast rest api url using php
3 months ago by
cmdcolin
★ 3.8k
0
votes
0
replies
436
views
Answer:
Answer: Bacterial Synteny Tools
3 months ago by
cmdcolin
★ 3.8k
0
votes
1
reply
501
views
Comment:
Comment: How to draw genome atlas on Linux?
3 months ago by
cmdcolin
★ 3.8k
0
votes
1
reply
501
views
Comment:
Comment: How to draw genome atlas on Linux?
3 months ago by
cmdcolin
★ 3.8k
1
vote
2
replies
501
views
Answer:
Answer: How to draw genome atlas on Linux?
3 months ago by
cmdcolin
★ 3.8k
1
vote
0
replies
918
views
Comment:
Comment: Where can I find a vcf file with individuals in it, that have a specific disease
3 months ago by
cmdcolin
★ 3.8k
2
votes
1
reply
918
views
Answer:
Answer: Where can I find a vcf file with individuals in it, that have a specific disease
3 months ago by
cmdcolin
★ 3.8k
2
votes
1
reply
1.2k
views
Answer:
Answer: extract sequence from genome by region
4 months ago by
cmdcolin
★ 3.8k
0
votes
0
replies
422
views
Comment:
Comment: The Biostar Herald for Tuesday, December 19, 2023
4 months ago by
cmdcolin
★ 3.8k
2
votes
0
replies
1.7k
views
Answer:
Answer: How to query 1000 genomes project VCF files for specific regions without downloa
4 months ago by
cmdcolin
★ 3.8k
0
votes
0
replies
750
views
Comment:
Comment: Finding human .vcf files online to download
4 months ago by
cmdcolin
★ 3.8k
1
vote
0
replies
635
views
Comment:
Comment: Fastest way to convert BED to GTF/GFF with gene_ids?
4 months ago by
cmdcolin
★ 3.8k
0
votes
0
replies
13k
views
Answer:
Answer: Which program, tool, or strategy do you use to visualize genomic rearrangements?
4 months ago by
cmdcolin
★ 3.8k
1
vote
1
reply
750
views
Answer:
Answer: Finding human .vcf files online to download
4 months ago by
cmdcolin
★ 3.8k
0
votes
0
replies
345
views
Comment:
Comment: Annotate Unplaced Scaffold with Chromosome Information
4 months ago by
cmdcolin
★ 3.8k
1
vote
0
replies
1.0k
views
Comment:
Comment: Using ggplot2 to make barplots of RNASeq data - maintaining sample metadata when
4 months ago by
cmdcolin
★ 3.8k
0
votes
1
reply
570
views
Comment:
Comment: How can I map coordinates between two strains of yeast?
4 months ago by
cmdcolin
★ 3.8k
0
votes
0
replies
818
views
Comment:
Comment: Circular genome browser
4 months ago by
cmdcolin
★ 3.8k
1
vote
0
replies
713
views
Comment:
Comment: How to overlap patient VCF with ClinVar database annotation using bedtools?
4 months ago by
cmdcolin
★ 3.8k
1
vote
1
reply
557
views
Answer:
Answer: Finding exons that are always included
5 months ago by
cmdcolin
★ 3.8k
0
votes
0
replies
590
views
Comment:
Comment: Strand bias in supplementary alignments from Nanopore
5 months ago by
cmdcolin
★ 3.8k
1
vote
0
replies
3.2k
views
Answer:
Answer: Visualization of maf alignments in JBrowse
5 months ago by
cmdcolin
★ 3.8k
3
votes
1
reply
590
views
Comment:
Comment: Strand bias in supplementary alignments from Nanopore
5 months ago by
cmdcolin
★ 3.8k
0
votes
1
reply
538
views
Answer:
Answer: Browser based tool for generating protein alignment figure
5 months ago by
cmdcolin
★ 3.8k
1
vote
1
reply
818
views
Comment:
Comment: Circular genome browser
5 months ago by
cmdcolin
★ 3.8k
0
votes
1
reply
568
views
Comment:
Comment: Low coverage, deletion and startloss? What do we see here?
5 months ago by
cmdcolin
★ 3.8k
0
votes
0
replies
1.1k
views
Comment:
Comment: Map genome positions onto protein coordinates?
5 months ago by
cmdcolin
★ 3.8k
0
votes
1
reply
568
views
Comment:
Comment: Low coverage, deletion and startloss? What do we see here?
5 months ago by
cmdcolin
★ 3.8k
0
votes
0
replies
605
views
Comment:
Comment: How to make bam from start pos of read 1 and end pos of read 2 from paired end b
5 months ago by
cmdcolin
★ 3.8k
0
votes
1
reply
1.1k
views
Comment:
Comment: Map genome positions onto protein coordinates?
5 months ago by
cmdcolin
★ 3.8k
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