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Comment: Comment: The famous WGS dataset, Ashkenazi Trio?
3 days ago by cmdcolin ★ 3.0k
2
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358
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Comment: Comment: How to Split 3000 WGS CRAM files into 1Mbp length chunks
12 days ago by cmdcolin ★ 3.0k
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324
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Comment: Comment: Haplotype specific alleles
20 days ago by cmdcolin ★ 3.0k
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0
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448
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Comment: Comment: How to convert chromosome locations to gene symbols?
23 days ago by cmdcolin ★ 3.0k
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512
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Comment: Comment: How to efficiently/quickly merge ~500k vcfs?
27 days ago by cmdcolin ★ 3.0k
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0
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308
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Comment: Comment: The Biostar Herald for Monday, May 01, 2023
4 weeks ago by cmdcolin ★ 3.0k
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0
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353
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Comment: Comment: Is my estimated genome coverage correct?
5 weeks ago by cmdcolin ★ 3.0k
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3.3k
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Comment: Comment: Finding Pdb File For Specific Transcript
7 weeks ago by cmdcolin ★ 3.0k
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0
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324
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Comment: Comment: Error parsing strand (?) from GFF line
9 weeks ago by cmdcolin ★ 3.0k
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1
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502
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Comment: Comment: RNA Sequencing and Vg pan -transcriptome build
10 weeks ago by cmdcolin ★ 3.0k
1
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1
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892
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Comment: Comment: How to perform synteny alignments and plots only with a gene?
10 weeks ago by cmdcolin ★ 3.0k
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506
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Comment: Comment: How to remove homozygous reference genotypes from multi-sample vcf file based on
11 weeks ago by cmdcolin ★ 3.0k
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1
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506
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Comment: Comment: How to remove homozygous reference genotypes from multi-sample vcf file based on
11 weeks ago by cmdcolin ★ 3.0k
0
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1
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401
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Comment: Comment: what does total count mean at a location in IGV
12 weeks ago by cmdcolin ★ 3.0k
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74k
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Comment: Comment: How to Install SamTools, HTSLib, and BCFTools on Ubuntu 18.04
3 months ago by cmdcolin ★ 3.0k
0
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0
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289
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Comment: Comment: Visualize variants and percentage of variants from one sample of Amplicon Seq da
4 months ago by cmdcolin ★ 3.0k
1
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901
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Comment: Comment: Mapping a small number of contigs to a reference subsequence
4 months ago by cmdcolin ★ 3.0k
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2
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1.0k
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Comment: Comment: bedGraph to bigwig
4 months ago by cmdcolin ★ 3.0k
0
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0
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484
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Comment: Comment: JBrowse on GitHub (A question about file size)
4 months ago by cmdcolin ★ 3.0k
0
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0
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563
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Comment: Comment: Extract alignment in fasta format from BAM/SAM file
4 months ago by cmdcolin ★ 3.0k
0
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728
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Comment: Comment: Get length of the alignment from bam file with shell
5 months ago by cmdcolin ★ 3.0k
0
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0
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806
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Comment: Comment: batch sequence retrieval using exon coordinates
5 months ago by cmdcolin ★ 3.0k
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0
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613
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Comment: Comment: remove CIGAR strings starting with insertion
updated 5 months ago by 39k • written 5 months ago by ★ 3.0k
0
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1
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506
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Comment: Comment: Gene location of both inherited gene
5 months ago by cmdcolin ★ 3.0k
0
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0
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963
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Comment: Comment: find the mate of a read using pysam
5 months ago by cmdcolin ★ 3.0k
0
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1
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963
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Comment: Comment: find the mate of a read using pysam
5 months ago by cmdcolin ★ 3.0k
1
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1
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2.1k
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Comment: Comment: pyCirclize - Circular visualization in Python
5 months ago by cmdcolin ★ 3.0k
0
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0
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38k
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Comment: Comment: Difference Between "Mate Pair" And "Pair-End"
5 months ago by cmdcolin ★ 3.0k
0
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1
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626
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Comment: Comment: How is p-value calculated in MACS2
5 months ago by cmdcolin ★ 3.0k
1
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1
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13k
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Comment: Comment: What are Supplementary Reads?
5 months ago by cmdcolin ★ 3.0k
1
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0
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575
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Comment: Comment: Visualization tools for phased haplotypes
6 months ago by cmdcolin ★ 3.0k
0
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1
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575
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Comment: Comment: Visualization tools for phased haplotypes
6 months ago by cmdcolin ★ 3.0k
3
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0
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382
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Comment: Comment: The Biostar Herald for Monday, November 14, 2022
6 months ago by cmdcolin ★ 3.0k
0
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0
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616
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Comment: Comment: How to open/work with wig or tdf files
7 months ago by cmdcolin ★ 3.0k
1
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0
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616
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Comment: Comment: Databases with Genes <-> Diseases relations
7 months ago by cmdcolin ★ 3.0k
0
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1
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789
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Comment: Comment: proper way to alter bgzf-compressed fastq files using htslib, multithreaded
8 months ago by cmdcolin ★ 3.0k
0
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1
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789
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Comment: Comment: proper way to alter bgzf-compressed fastq files using htslib, multithreaded
8 months ago by cmdcolin ★ 3.0k
0
votes
1
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791
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Comment: Comment: From fastq files to fasta
8 months ago by cmdcolin ★ 3.0k
0
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0
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1.3k
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Comment: Comment: Tools to obtain sequence from bam file
8 months ago by cmdcolin ★ 3.0k
0
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0
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1.3k
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Comment: Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
8 months ago by cmdcolin ★ 3.0k
0
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2
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1.3k
views
Comment: Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
8 months ago by cmdcolin ★ 3.0k
0
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1
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659
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Comment: Comment: Which VCF file to select for generating Multiple sequence alignment of a gene?
8 months ago by cmdcolin ★ 3.0k
0
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0
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659
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Comment: Comment: Which VCF file to select for generating Multiple sequence alignment of a gene?
8 months ago by cmdcolin ★ 3.0k
0
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1
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444
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Comment: Comment: PAN GENOME versus REFERENCE GENOME
9 months ago by cmdcolin ★ 3.0k
0
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1
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1.2k
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Comment: Comment: paired-end reads, idxstats, and samtools and grep
9 months ago by cmdcolin ★ 3.0k
0
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0
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566
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Comment: Comment: Convert a cram file to fasta
9 months ago by cmdcolin ★ 3.0k
0
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1
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566
views
Comment: Comment: Convert a cram file to fasta
9 months ago by cmdcolin ★ 3.0k
1
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0
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522
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Comment: Comment: Chromosome pair numbers in variant annotation.
9 months ago by cmdcolin ★ 3.0k
0
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1
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2.0k
views
Comment: Comment: How to determine assembly of a VCF?
9 months ago by cmdcolin ★ 3.0k
2
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1
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823
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Comment: Comment: Can IGV simultaneously show alignments for different reference genomes in differ
9 months ago by cmdcolin ★ 3.0k
289 results • Page 1 of 6
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