User: linche_yi

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linche_yi0
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Posts by linche_yi

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genotype and phenotype dataset
... Hi, I have been looking for data about genotype and phenotype. If a gene is perturbed(knockout etc.), there may be phenotypes. Please give me some advices about these datasets. Thanks in advance! ...
gene snp written 10 months ago by linche_yi0
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CRISPR-Cas9 genome-scale screen
... When we do a CRISPR-Cas9 genome-scale screen, how can we make a relationship between genotype and phenotype by sgRNA enrichment or depletion? How to quantify? Can I get the relationships between genes? I'll appreciate it if someone can explain the detail. ...
next-gen sequencing written 12 months ago by linche_yi0
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Comment: C: genome-scale screened transcripts dataset
... Thanks for your suggestion! I have searched Perturb-seq in Pubmed, but it seems single-cell RNA sequencing. I am not sure these datasets can be used. To be more precise, I want the gene expression level data. For example, we knock out a target gene, and then we do RNA-seq, we can knock out others ...
written 12 months ago by linche_yi0
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genome-scale screened transcripts dataset
... hello, everyone I am a new one here. I have been trying to find ***transcripts data***. I want genome-scale screened data in which each gene is knocked out by CRISRP-Cas9 or silenced by shRNA, and then do RNA-seq, the outcome--transcriptome data is what I need. But I find nothing about what I wan ...
rna-seq written 12 months ago by linche_yi0 • updated 12 months ago by ATpoint44k

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