User: 2822462298

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282246229850
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Posts by 2822462298

<prev • 32 results • page 1 of 4 • next >
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How to create a Fasta file using info from a Excel file
... I have an excel file which looks like this: Genex AAAAA Geney TTTTT Genez GGGGG How to convert it into a fasta file like: >Genex AAAAA >Geney TTTTT >Genez GGGGG ...
fasta rna rna-seq written 5 months ago by 282246229850 • updated 5 months ago by Mensur Dlakic6.0k
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Comment: C: How to get 1 top hit only for each query in blastx
... Hi Fatima, I tried it and I got the same result... ...
written 5 months ago by 282246229850
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Comment: C: How to get 1 top hit only for each query in blastx
... Thanks Asaf, yeh I agree the built-in option does not work properly. ...
written 5 months ago by 282246229850
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Comment: C: How to get 1 top hit only for each query in blastx
... I guess this command does not apply to blastx ...
written 5 months ago by 282246229850
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How to get 1 top hit only for each query in blastx
... I am running blastx using the following command: blastx -query CDS.fa -db local_path_nr -num_threads 36 -evalue 1e-5 -outfmt 6 -max_target_seqs 1 -out CDS_blast.txt I aim to get one hit for each query only but there are still, say 2-3 hits, per query occasionally. How do I save the top hit onl ...
blastx blast rna-seq written 5 months ago by 282246229850 • updated 5 months ago by Fatima590
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Comment: C: How to generate sequence length distribution from Fasta file
... Thanks Fatima, this works well for me! ...
written 6 months ago by 282246229850
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Comment: C: How to generate sequence length distribution from Fasta file
... Thank you! This is useful but it really took a long time to read the fasta file in r ...
written 6 months ago by 282246229850
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How to generate sequence length distribution from Fasta file
... I got a fasta file of miRNAs with sequence length ranging from 17-32. How can I generate a table of length distribution like: length count 17 x 18 y 19 z Also, any idea if I use fastq files? Do I need to convert fastq to fasta first? ...
fatsa rna-seq srna-seq written 6 months ago by 282246229850
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Comment: C: Trimming of fasta file headers
... Thank you for your reply! That's really helpful ...
written 6 months ago by 282246229850
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Comment: C: Trimming of fasta file headers
... Hi, Thank you for your reply. I may need to remove '.mrna1' as well ...
written 6 months ago by 282246229850

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