User: Strand NGS

gravatar for Strand NGS
Strand NGS40
Reputation:
40
Status:
New User
Location:
India
Website:
https://www.strand-ngs...
Last seen:
2 days, 12 hours ago
Joined:
2 months, 2 weeks ago
Email:
s******@strandngs.com

Strand NGS (Formerly Avadis NGS) is an integrated platform that provides analysis, management and visualization tools for next-generation sequencing data. It supports extensive workflows for alignment, RNA-Seq, small RNA-Seq, DNA-Seq, Methyl-Seq, MeDIP-Seq, and ChIP-Seq experiments.

Posts by Strand NGS

<prev • 10 results • page 1 of 1 • next >
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Comment: C: Homer analysis result on -region output format error
... Hi, Your 10th column header is not wrapped exactly and is spilling over to the 11th column. I think that's why you are getting confused with the headers. ...
written 16 days ago by Strand NGS40
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Answer: A: GRanges: remove ranges that falls in between a larger range?
... Hi You can try out reduce function reduce(g) GRanges object with 1 range and 0 metadata columns: seqnames ranges strand [1] Chr1 2-30 + ------- seqinfo: 1 sequence from an unspecified genome; no seqlengths ...
written 18 days ago by Strand NGS40
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Comment: A: Webinar on Extensive Assessment of Gene Fusion Detection, Prioritization, Annota
... Have you registered yet? Here is the link: https://www.strand-ngs.com/webinar_registration ...
written 4 weeks ago by Strand NGS40
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Answer: A: htseq gene atrribute error
... The gff3 file you are passing doesn't have the 'gene_id' attribute. Please do check the file and see the additional options in htseq to pass the correct id. Some of other posts here that you can refer to: https://www.biostars.org/p/283868/ https://www.biostars.org/p/196012/ and many more are th ...
written 4 weeks ago by Strand NGS40
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News: Webinar on Extensive Assessment of Gene Fusion Detection, Prioritization, Annotation and Characterization on 11 March 2020
... **Registration Link:** : https://www.strand-ngs.com/webinar_registration ***Abstract:*** This webinar will focus on the gene fusion detection and characterization using Strand NGS, a sequencing data analysis software designed by biologists - for biologists. Fusion events are commonly observed i ...
genefusion news webinar detection rna-seq written 5 weeks ago by Strand NGS40
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Answer: A: DNA methylation and TCGA and normal sample tissue
... You can check out https://gtexportal.org/home/ also for the normal sample tissues you are looking for. But not sure if it will have data regarding methylation. ...
written 5 weeks ago by Strand NGS40
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Answer: A: How to generate sequence length distribution from Fasta file
... If you are comfortable in R, you can use the following code. Note: You will have to install the package seqinr before trying this library(seqinr) f <- read.fasta("input.fa") table(getLength(f)) ...
written 6 weeks ago by Strand NGS40
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Answer: A: Chromosome position in VCF file
... Hi, Here are some of the similar posts you can refer to https://www.biostars.org/p/299110/ https://www.biostars.org/p/98582/ ...
written 7 weeks ago by Strand NGS40
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Comment: C: DEG using edgeR script via StrandNGS
... Thank you rtyb91!!! It was a pleasure talking to you. We will always be available to help you out! ...
written 10 weeks ago by Strand NGS40
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Answer: A: How to customize the attibutes of geo datasets?
... Hi You can see on the right hand side, in the "search details" box whether the filter has been activated. Also in the results pane, you can check whether the filter has been applied ...
written 10 weeks ago by Strand NGS40

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