User: nisrinalulu

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nisrinalulu10
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Posts by nisrinalulu

<prev • 10 results • page 1 of 1 • next >
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Comment: C: Help in MEGAHIT! I have no idea with my result from the process in MEGAHIT.
... Ah, i see. OK Kevin, i'll check with my IT Service Desk. Thank you for your advise. ...
written 4 days ago by nisrinalulu10
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Comment: C: Help in MEGAHIT! I have no idea with my result from the process in MEGAHIT.
... Dear Kevin Blighe, Thank you for your understanding. I will make more effort for my job. Yes, in the qsub output there is log file. Here is the result whe i open log file: 2020-01-15 12:14:14 - MEGAHIT v1.2.9 ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ (END) I have no idea how to solved my probl ...
written 4 days ago by nisrinalulu10
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Comment: C: Help in MEGAHIT! I have no idea with my result from the process in MEGAHIT.
... Dear Kevin Blighe, Yes, thank you for your reminding. I'm really new for this job. Sorry for make uncomfort. Once again thank you for reminding me 🙏 ...
written 4 days ago by nisrinalulu10
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Help in MEGAHIT! I have no idea with my result from the process in MEGAHIT.
... Hi everyone, I have a problem for my job using MEGAHIT. I write command in shell script and then run it in SSH server. Command for MEGAHIT is like this: #!/bin/bash #PBS -q normal #PBS -l nodes=1:ppn=2 cd $PBS_O_WORKDIR BIN="/app/bin/MEGAHIT_v1.2.9" megahit - ...
assembly next-gen metagenomic written 4 days ago by nisrinalulu10
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(Closed) Please give me an example for MEGAHIT command
... Hi everyone! I try to use MEGAHIT for assembly my sequences for the first time. I already read description about MEGAHIT in github or other wbesite. When i read a description in [1]: http:// http://www.metagenomics.wiki/tools/assembly/megahit there is description like this -1 com ...
assembly next-gen written 5 days ago by nisrinalulu10
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Error in MEGAHIT
... Dear everyone! I have problem to run MEGAHIT in .sh script to assembly my sequence. I put command like this chmod +x assembly.sh (base) [husna@hn001 lulu]$ cd assembly.sh (base) [husna@hn001 assembly.sh]$ megahit -1 HA_1.fq.gz -2 HA_2.fq.gz -o asm and the answer for my command is like ...
assembly next-gen metagenomic forum written 5 days ago by nisrinalulu10
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Comment: C: Assembling the sequences with MEGAHIT. How to make it works?
... Actually i want to run job with PBS/qsub to submit job in SSH with this command: #!/bin/bash #PBS -q normal #PBS -l nodes=1:ppn=2 cd $PBS_O_WORKDIR BIN="/app/bin/vasp_5.2_intelmpi_ifort" mpirun -n 2 $BIN > LOG1 megahit -1 HA_1.fq.gz -2 HA_2.fq.gz -o out but i don't k ...
written 5 days ago by nisrinalulu10
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Comment: C: Assembling the sequences with MEGAHIT. How to make it works?
... OK, thank you so much. I am going to try it. ...
written 5 days ago by nisrinalulu10
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Comment: C: Assembling the sequences with MEGAHIT. How to make it works?
... Yes, i have tried other directory name with this command megahit -1 HA_1.fq.gz -2 HA_2.fq.gz -o HA.megahit_asm But the answer is 2020-01-14 20:57:43 - MEGAHIT v1.2.9 megahit: Cannot find file /home/husna/HA_1.fq.gz ...
written 5 days ago by nisrinalulu10
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Assembling the sequences with MEGAHIT. How to make it works?
... Hi! I am a really for using MEGAHIT. I try to use MEGAHIT with command: #!/bin/bash #PBS -q normal #PBS -l nodes=1:ppn=2 cd $PBS_O_WORKDIR BIN="/app/bin/vasp_5.2_intelmpi_ifort" mpirun -n 2 $BIN > LOG1 megahit -1 HA_1.fq.gz -2 HA_2.fq.gz -o out and t ...
assembly sequence written 5 days ago by nisrinalulu10 • updated 5 days ago by Pierre Lindenbaum125k

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