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Showing :
questions
3
votes
6
replies
1.2k
views
If I need to repeatedly perform variant calling from BAM for single gene only, do I really need entire reference FASTA?
variant-calling
bam
vcf
bcftools
fasta
22 months ago by
sbstevenlee
▴ 480
2
votes
2
replies
1.4k
views
Weird behavior of `--max-depth` argument from `bcftools mpileup` command when its value is too low
bcftools
mpileup
updated 9 months ago by
Ram
43k • written 24 months ago by
sbstevenlee
▴ 480
1
vote
4
replies
2.0k
views
Germline variant calling from BAM without reference
vcf
calling
bam
variant
2.1 years ago by
sbstevenlee
▴ 480
1
vote
2
replies
3.1k
views
Aspera Connect problem with "ascp: Taget address not available"
ascp
Aspera
2.2 years ago by
sbstevenlee
▴ 480
1
vote
2
replies
1.3k
views
Discordant results from the Scanpy tutorial "Preprocessing and clustering 3k PBMCs"
scanpy
updated 2.3 years ago by
rpolicastro
13k • written 2.3 years ago by
sbstevenlee
▴ 480
3
votes
6
replies
1.5k
views
Is Ensembl VEP down right now?
Ensembl
VEP
updated 2.8 years ago by
badribio
▴ 290 • written 2.8 years ago by
sbstevenlee
▴ 480
0
votes
1
reply
1.2k
views
Error on pysam.bcftools.mpileup: "Segmentation fault (core dumped)"
pysam
bcftools
mpileup
samtools
3.7 years ago by
sbstevenlee
▴ 480
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