User: JM

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JM0
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Comment: C: Fisher strand (FS) 0?
... While it seems fairly balanced, I'm surprised that it is 0.000 (a p-value of 1). A p-value of 0.999 would still generate a phred scaled p value of 0.004. ...
written 10 months ago by JM0
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Fisher strand (FS) 0?
... Hello, Can you help me understand why the following variant has a fisher stand (FS) phred-scaled P value of 0? 11 65107949 . G A 48.06 PASS AC=1;AF=0.500;AN=2;DP=73;FS=0.000;MQ=245.31;MQRankSum=7.260;QD=0.66;ReadPosRankSum=4.771;SOR=0.633;FractionInformativeR ...
fs gatk fisher strand written 10 months ago by JM0 • updated 10 months ago by finswimmer14k

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