User: Monete R. Gomes

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Posts by Monete R. Gomes

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Comment: C: Download full list of SNPs and their coordinates in hg38
... Hi Shicheng Guo Do you know if such simply change on chrom names to equivalent ones (using this table you shared above) could be done, without major problems? ...
written 7 months ago by Monete R. Gomes0
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Comment: C: How to download dbSNP153 vcf files in hg19/GRCH37 version
... Thank you Shicheng Guo for this information. It's also important to highlight here that, this VCF version, chrom names are different. They are in NCBI format (something like NC_... or NT_...). Also, I didn't find variants from MT chrom on those VCF files. If you want this chrom names in UCSC (hg19 ...
written 7 months ago by Monete R. Gomes0
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Comment: C: BCF Tools Filter on 1000Genomes Annotation
... Hi I had same problem on my vcf. I also wanted to filter a VCF based on the allele frequency as given by ANNOVAR annotation. Like you said, I've changed my vcf INFO header (from "String" to "Float", only on site which I wanted to filter) and bcftools query (**only**) worked fine. *BTW... excellent ...
written 10 months ago by Monete R. Gomes0

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Supporter 10 weeks ago, voted at least 25 times.

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