User: Kedu

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Kedu0
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Posts by Kedu

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Comment: C: How to analyze scRNA-seq data to compare lncRNA and mRNA
... Thank you Arup. I was able to undo the clustering... I know this may sound trivial, but please any pointers on what to do next? I'm finding it difficult to get a workflow. On paper what I had planned to do was: *Load data > Process data (normalize data, scale data, regress out wanted genes) & ...
written 8 months ago by Kedu0
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Comment: C: How to analyze scRNA-seq data to compare lncRNA and mRNA
... Thank you Arup for the pointer. I clustered my cells using tSE and UMAP, and each time I run the "AverageExpression" Function it calculates for each cluster. Is there a way to undo the clustering as I want to analyze just the lncRNA and mRNA gene expression, and not theclusters. Thank you ...
written 8 months ago by Kedu0
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How to analyze scRNA-seq data to compare lncRNA and mRNA
... Hi Everyone, I am very new to scRNA-seq analysis, and I'm trying to analyze some scRNA-seq data. The goal of the analysis is to compare lncRNA and mRNA genes by calculating:- overall mean expression of lncRNA genes and mRNA genes - and expression levels f lncRNA genes and mRNA genes. So far, I perf ...
mrna lncrna rna-seq coexpression written 8 months ago by Kedu0

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