User: benoit.duc

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benoit.duc0
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Posts by benoit.duc

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Comment: C: Xtract (Entrez Direct) issue when in bioinfo environment
... I ran both commands in a fresh terminal (not in conda env) $ which esearch /Users/myUserName/edirect/esearch (base) "$ esearch -h" opened the help page Precision: esearch works in the conda env, but not xtract ...
written 4 weeks ago by benoit.duc0
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Comment: C: Xtract (Entrez Direct) issue when in bioinfo environment
... This is what I get: $ conda install -c bioconda entrez-direct Collecting package metadata (current_repodata.json): done Solving environment: done # All requested packages already installed. ...
written 5 weeks ago by benoit.duc0
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Comment: C: Xtract (Entrez Direct) issue when in bioinfo environment
... This didn't work for me and the issue is still the same ...
written 5 weeks ago by benoit.duc0
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Comment: C: Xtract (Entrez Direct) issue when in bioinfo environment
... Should have been just: xtract -version Same issue ...
written 5 weeks ago by benoit.duc0
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Xtract (Entrez Direct) issue when in bioinfo environment
... Hi, Following the instructions on the ncbi website I installed Entrez Direct on my computer (MacOS). When I run the ncbi-provided script to confirm the installation in a new terminal everything is fine. But when I enter the bioinfo environment (after "conda activate bioinfo") I cannot confirm the i ...
entrez direct biostar handbook written 5 weeks ago by benoit.duc0 • updated 20 days ago by Istvan Albert ♦♦ 82k

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