User: Pavid

gravatar for Pavid
Pavid160
Reputation:
160
Status:
Trusted
Location:
Last seen:
1 year, 10 months ago
Joined:
9 years, 3 months ago
Email:
p*************@gmail.com

Posts by Pavid

<prev • 35 results • page 1 of 4 • next >
0
votes
1
answer
2.2k
views
1
answers
Comment: C: Supertree Or Consensus Tree?
... I was trying to use phylip consense to build a consensus tree but it gaves me an error: name not found in first tree. In some trees I have more samples than in others. Do I need to remove the extra samples? If so, do you any other good program to do this? Thank you ...
written 8.2 years ago by Pavid160
0
votes
1
answer
2.2k
views
1
answers
Comment: C: Supertree Or Consensus Tree?
... thank you, you have been very helpful. I will read more about it, probably do a consensus tree now since I have samples from different sources and I'm not expecting much similarity, and I will have more perhaps try to do something similar with what you said ...
written 8.2 years ago by Pavid160
0
votes
1
answer
2.2k
views
1
answers
Comment: C: Supertree Or Consensus Tree?
... so if I correctly understanding, that's basically the same thing that doing a consensus tree, no? ...
written 8.2 years ago by Pavid160
0
votes
1
answer
2.2k
views
1
answers
Comment: C: Supertree Or Consensus Tree?
... I already have a individual phylogenetic tree for all the different methods. what do you mean with mapping? ...
written 8.2 years ago by Pavid160
1
vote
1
answer
2.2k
views
1
answer
Supertree Or Consensus Tree?
... Hey, I previously asked something similar but I've been reading some things to make a good decision and I'm a bit confused. Perhaps silly but I'm relatively new to this field. I'm working with M. tuberculosis strains, and I have different types of data: - SNP (Single Nucleotide Polymorphism) - M ...
phylogeny consensus snp written 8.2 years ago by Pavid160 • updated 8.2 years ago by Vitis2.3k
0
votes
1
answer
1.8k
views
1
answers
Comment: C: Best Way To Build A Tree With Numeric Data (Range 1-25) Phylip Pars Or Others
... Thank you david w for your response. Actually I've never used R, I'm more familiarized with python. But I can try it ...
written 8.3 years ago by Pavid160
0
votes
1
answer
1.8k
views
1
answers
Comment: C: Best Way To Build A Tree With Numeric Data (Range 1-25) Phylip Pars Or Others
... the numbers represent MIRU (Mycobacterial Interspersed Repetitive Units), number of repeats. What would the best option then? ...
written 8.4 years ago by Pavid160
3
votes
1
answer
1.8k
views
1
answer
Best Way To Build A Tree With Numeric Data (Range 1-25) Phylip Pars Or Others
... Hey! I'm trying to build a tree from this alignment. I've converted the numbers with more than one algorithm into letters: a for 10, b for 11 and p for 25. I have tried to use Phylip pars to build a tree, although I don't really understood how it works. So I want to understand the program to provi ...
phylogenetics written 8.4 years ago by Pavid160 • updated 8.3 years ago by David W4.7k
0
votes
1
answer
5.8k
views
1
answers
Comment: C: Phylogenetic Tree With Dna, Binary And Multi Data - Raxml Update
... do I have to make a script to transform the data? ...
written 8.4 years ago by Pavid160
1
vote
1
answer
5.8k
views
1
answers
Comment: C: Phylogenetic Tree With Dna, Binary And Multi Data - Raxml Update
... ok, I've corrected the positions and integrate them all in one file. now it gives me this error: Multi State Error, characters must be used in the order they are available, i.e. 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V You are using the following ...
written 8.4 years ago by Pavid160

Latest awards to Pavid

Popular Question 6.9 years ago, created a question with more than 1,000 views. For Dendrogram Of Snps
Popular Question 6.9 years ago, created a question with more than 1,000 views. For Supertree With Matrix Representation With Parsimony
Popular Question 6.9 years ago, created a question with more than 1,000 views. For How To Replace Tree Name By Dot
Popular Question 6.9 years ago, created a question with more than 1,000 views. For Supertree Or Consensus Tree?
Popular Question 6.9 years ago, created a question with more than 1,000 views. For Phylogenetic Tree With Dna, Binary And Multi Data - Raxml Update
Popular Question 6.9 years ago, created a question with more than 1,000 views. For Best Way To Build A Tree With Numeric Data (Range 1-25) Phylip Pars Or Others
Supporter 6.9 years ago, voted at least 25 times.
Popular Question 8.4 years ago, created a question with more than 1,000 views. For Phylogenetic Tree With Dna, Binary And Multi Data - Raxml Update
Teacher 9.1 years ago, created an answer with at least 3 up-votes. For A: What Are The Classic Papers In Bioinformatics?

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1220 users visited in the last hour