User: vishalchanda364

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Posts by vishalchanda364

<prev • 47 results • page 2 of 5 • next >
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Tool for removing Spurious alignments from metagenomic alignment
... Hello, Can anyone suggest the best tool for removing the spurious alignments from my metagenomic aligned data.? ...
alignment written 3 months ago by vishalchanda36420
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Comment: C: Virsorter running error
... Thank you for the help, still the error remains. ...
written 3 months ago by vishalchanda36420
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Comment: C: Virsorter running error
... I have checked with all possible ways, and checked with other files as well but end up getting the same error. The command which is used is: perl wrapper_phage_contigs_sorter_iPlant.pl -f ../F_V_0_29_R.contigs.genes.faa --data-dir ../virsorter-data And yes the files are totally fine, I am abl ...
written 3 months ago by vishalchanda36420
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Comment: C: Virsorter running error
... Yes, I followed the tutorial in the github and I am running it inside the envirnment. But still the error is same. And while installing from github, I have skipped this step > To run VirSorter from any directory, you can make symbolic links to Does this make any change? Can you please tell me ...
written 3 months ago by vishalchanda36420
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Comment: C: Virsorter running error
... and when I am running the following command `wrapper_phage_contigs_sorter_iPlant.pl --help` I am getting the following error: > bash: wrapper_phage_contigs_sorter_iPlant.pl: command not found... ...
written 3 months ago by vishalchanda36420
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Comment: C: Virsorter running error
... I am getting this following error while running `which wrapper_phage_contigs_sorter_iPlant.pl` command. > /usr/bin/which: no wrapper_phage_contigs_sorter_iPlant.pl in (/home/usr/miniconda3/envs/virsorter/bin:/home/usr/miniconda3/condabin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/ ...
written 3 months ago by vishalchanda36420
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Virsorter running error
... Hello all, After downloading the virsorter tools using conda environment, I checked whether th command is running or not with `./wrapper_phage_contigs_sorter_iPlant.pl --help` and it work all fine, but when running with my **File.fna** file format it shows the following error. > Step 1 failed, w ...
next-gen sequencing written 3 months ago by vishalchanda36420 • updated 3 months ago by onestop_data260
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bi-allelic SNP analysis
... Hello, Can someone explain me this step that scientist have done. > Then, only bi-allelic SNPs (variant quality score > 200, cumulative depth > 200, individual allele depth R 3) were taken into analysis, and those were further subsetted to cases where an alternative allele was absent in t ...
gene next-gen sequencing written 3 months ago by vishalchanda36420
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Comment: C: Demovir: Taxonomic Classification of Viral Particle
... okay Thank you so much.!! ...
written 3 months ago by vishalchanda36420
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Demovir: Taxonomic Classification of Viral Particle
... Hello, I was doing this step of Taxonomic Classification using the Demovir. I followed all the steps given in [1] but then, in this step `/path_to_demovir/demovir.sh input.fasta threads` the command is not running properly, The error I am getting is: sort: cannot read: trembl_ublast.viral.tx ...
next-gen alignment sequencing written 3 months ago by vishalchanda36420 • updated 7 weeks ago by Biostar ♦♦ 20

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