User: vishalchanda364

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Posts by vishalchanda364

<prev • 47 results • page 3 of 5 • next >
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Comment: C: vContact2 donwload and command line
... Okay Thank You so much. ...
written 5 months ago by vishalchanda36420
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Comment: C: vContact2 donwload and command line
... Yes, it helped. I have downloaded tool. Thank you; But can you help me with one more thing? the command line, I am not able to understand that. Can you give me an example of command line, please? ...
written 5 months ago by vishalchanda36420
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vContact2 donwload and command line
... Is there any way that I can download and use command line to run the vConTACT2 software for MCL-Clustering of protein homologies and putative viral contigs. I am only getting the online tool through Discovery Environment by Cyverse. But it would me more handy and safe if it is through command line.? ...
assembly alignment sequencing written 5 months ago by vishalchanda36420
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Family level taxonomic annotation
... Hello, After removing all the unwanted reads from my metagenomics data (unmapped reads - after sequence alignment) I am having the putative viral contigs for which family level taxonomic annotations must be done, from the paper which I read, it says it is to be done using the DemoVir Script, but I ...
genome next-gen sequence written 5 months ago by vishalchanda36420 • updated 5 months ago by gb1.8k
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Comment: C: Sequence Alignment using Bowtie2
... Thank you so much for the help, I thought my commands had some issue with the result. Now, I got it that filtering reads is a separate step. ...
written 5 months ago by vishalchanda36420
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Sequence Alignment using Bowtie2
... Hello, I have been working on the metagenomics Illumina paired end data (2x150 seq length), but came across with a mistake done by me. Now, I have the filtered, adapter free, high quality sequences which I need to align to the cpn60 database and remove the mapped reads so that I have the sequences ...
genome alignment next-gen written 5 months ago by vishalchanda36420
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Comment: C: Bam aligmnet file viewing.
... Thank you so much for the help ...
written 5 months ago by vishalchanda36420
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Comment: C: Bam aligmnet file viewing.
... Thank you so very much for the help. ...
written 5 months ago by vishalchanda36420
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Comment: C: Bam aligmnet file viewing.
... I have aligned my data with cpn60 database using bowtie2, and want to remove the unmapped sequences for which I have been struggling. I used the samtools view option but understood nothing. I want to visualize the aligned data.( Human readable.) ...
written 5 months ago by vishalchanda36420
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Bam aligmnet file viewing.
... Hello, I have been working on this bam file to visualize the alignment, and till now I have not achieved any sort of result, can anyone help me with this issue? I am working on metagenomics data, and trying to use samtools for visualizing the (.bam) file. Thanks in advance. ...
genome assembly next-gen written 5 months ago by vishalchanda36420 • updated 5 months ago by colindaven2.3k

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