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0
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327
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Finding percentage of a specific cell type in stromal vascular fraction online
macrophages markers T cells database SVF
15 months ago by salman_96 ▴ 70
3
votes
6
replies
1.2k
views
6 follow
Finding unique and identical rows between multiple columns of a data frame in R
identical unique rows R Dataframe
written 17 months ago by ▴ 70
3
votes
1
reply
506
views
How to download the metadata information form AE (array express)
metadata Arrayexpress
updated 18 months ago by ★ 2.0k • written 18 months ago by ▴ 70
2
votes
1
reply
428
views
Merge/Join one data frame (X) to multiple data frames separately
join loop merge dataframe
updated 19 months ago by 13k • written 19 months ago by ▴ 70
1
vote
4
replies
1.9k
views
Converting elements of a nested list into individual data frames in R
Nested Dataframe R list
19 months ago by salman_96 ▴ 70
0
votes
1
reply
414
views
Creating multiple phenotype datasets using bootstrap method "Bootstrap-samples-by-column-of-a-data-frame-in-r"
DEGs bootstrap
19 months ago by salman_96 ▴ 70
2
votes
12
replies
1.5k
views
Generating vcf files per individual instead of one big file from bam files
vcf bam variant
updated 13 months ago by 43k • written 20 months ago by ▴ 70
2
votes
3
replies
709
views
Ending up with only one BAM file
bam variant-calling star
updated 13 months ago by 43k • written 20 months ago by ▴ 70
4
votes
4
replies
984
views
Multiple exposure timelines (time-points) in one DESeq2 object or multiple DESeq objects
time points exposure drug DEGs multiple DESEQ2
updated 21 months ago by 19k • written 21 months ago by ▴ 70
5
votes
4
replies
720
views
DESEQ2 study design for different time points between controls and high dose samples.
drug DEGs DESEQ2 exposure
updated 21 months ago by ★ 2.0k • written 22 months ago by ▴ 70
0
votes
1
reply
454
views
bwa mem for multiple paired read samples FastQfiles
fastq reads mem bwa paired
updated 22 months ago by 161k • written 22 months ago by ▴ 70
2
votes
1
reply
525
views
Locating SNPs from genes of interest in VCF
vcf snps bcftools mpileup
updated 10 months ago by 43k • written 22 months ago by ▴ 70
4
votes
2
replies
672
views
Is there any way to normalize a sample with high number of reads assigned to it?
fastp sequencing depth RSEM STAR
updated 22 months ago by 21k • written 22 months ago by ▴ 70
2
votes
3
replies
1.5k
views
Reporting results from fastp Read GC content
fastp MultiQC PE sequencing GC
22 months ago by salman_96 ▴ 70
0
votes
1
reply
474
views
Extracting genomic coordinates for a Variant calling pipeline
VCF Genomic-coordinates Samtools Variant-calling
updated 10 months ago by 43k • written 22 months ago by ▴ 70
2
votes
2
replies
1.1k
views
Donwloading latest version of Mouse ref genome
Mus-musculus Ensembl Reference-genome
updated 13 months ago by 43k • written 23 months ago by ▴ 70
0
votes
1
reply
467
views
Which DeSeq2 study design to use when there is data from controls and two different disease states (moderate and high) and stage level (1,2,3)? And h…
design Bioconductor R Study DeSeq2
updated 23 months ago by 13k • written 23 months ago by ▴ 70
0
votes
3
replies
902
views
Recommendation for pathway analysis
Analysis Pathway
updated 2.6 years ago by 81k • written 2.6 years ago by ▴ 70
2
votes
4
replies
1.5k
views
How to cite a pathway from WikiPathways in text and in references in APA format
wikipathways
written 2.9 years ago by ▴ 70
3
votes
8
replies
4.7k
views
Plink update name flag, setting column names
plink update-name
updated 2.9 years ago by 11k • written 3.0 years ago by ▴ 70
2
votes
3
replies
930
views
Changing length of x axis on ggplot
r ggplot ggplot2
updated 2.9 years ago by ▴ 80 • written 2.9 years ago by ▴ 70
0
votes
3
replies
1.9k
views
Possible to remove .nosex IDs in Plink1.9
--allow-no-sex --must-have-sex plink1.9
3.0 years ago by salman_96 ▴ 70
0
votes
5
replies
1.1k
views
Merging two linux files based on same rows
rsID coordinates plinkfile Merge
updated 3.0 years ago by 141k • written 3.0 years ago by ▴ 70
1
vote
2
replies
861
views
Getting Null in sink file when running lme in R using python to generate multiple R codes
R python lme sink
updated 3.0 years ago by 43k • written 3.0 years ago by ▴ 70
2
votes
2
replies
814
views
Remove all rows that begin with characters and keep only those that begin with numbers in Linux.
hg19 linux
updated 3.0 years ago by 35k • written 3.0 years ago by ▴ 70
0
votes
3
replies
845
views
Obtaining required rows from HG19 file with R or Linux
hg19
updated 3.0 years ago by 43k • written 3.0 years ago by ▴ 70
0
votes
5
replies
1.4k
views
Possible to merge three plink bim, bed and fam files?
bmerge Plink1.9
updated 3.0 years ago by 2.8k • written 3.0 years ago by ▴ 70
1
vote
2
replies
702
views
Modifying dataframe in R based on Unique values in 2nd column
R dataframe
3.0 years ago by salman_96 ▴ 70
6
votes
5
replies
1.1k
views
6 follow
Remove 2nd colon and rest of the values in a dataframe using R/ Unix
coordinates SNP Unix R
updated 3.0 years ago by 11k • written 3.0 years ago by ▴ 70
1
vote
2
replies
1.9k
views
SNP coordinates to rsID in .bim file
rsID snp plink plink1.9
updated 3.0 years ago by 35k • written 3.0 years ago by ▴ 70
0
votes
0
replies
576
views
How to add rs ID to SNP dosage file
SNPs Plink rsID
updated 3.0 years ago by 161k • written 3.0 years ago by ▴ 70
1
vote
2
replies
808
views
SNP/Gene to cell type
cell SNPs
updated 10 months ago by 43k • written 3.0 years ago by ▴ 70
32 results • Page 1 of 1
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