User: aravind ramesh

gravatar for aravind ramesh
Reputation:
500
Status:
Trusted
Location:
India
Last seen:
5 years, 3 months ago
Joined:
6 years, 8 months ago
Email:
v**********@yahoo.com

I am a graduate student Currently working on Human-Disease PPI Networks

Posts by aravind ramesh

<prev • 66 results • page 1 of 7 • next >
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All Possible Substitutions In The Human Reference Genome
... I was recently reading the CADD paper, they say that "all 8.6 billion possible substitutions in the human reference genome (GRCh37)". I thought possible substituiions should be more than that because of the genome size is arround 3 billion bases. Why is it different ? ...
human written 5.3 years ago by aravind ramesh500 • updated 14 months ago by Biostar ♦♦ 20
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Comment: C: Number Of Synonymous Vs. Nonsynonymous Mutations Between Species (Ensembl)
... Are you looking after dN/dS ratio and comaprison between sps. ? ...
written 5.4 years ago by aravind ramesh500
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Psap (Position Specific Amino-Acid Probability) Script
... I wanted to calculate Position Specific Amino-Acid Probability scores from MSA. I need script to calculate psap. Earlier I used to use script from "http://www.mobioinfor.cn/parepro" which is down. If anybody has the script or any of your own version, please share here. ...
snp written 5.4 years ago by aravind ramesh500
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Comment: C: What Predicate About Disease Is Suitable For Bioresource?
... Your Hyper-Links are not properly formatted. ...
written 5.5 years ago by aravind ramesh500
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Psiblast Standalone Tool Giving Zero-Sized Files As Output
... System : PSI-BLAST 2.2.29+, Linux - 64Bit. (RAM-512 GB; Processors- 48(nproc)) psiblast -query in.fasta -db /Path/To/NR/nr -outfmt 7 -num_iterations 3 -out out.out I am running several psi-blast in a script in different directories. Some of the psiblast invocations are giving some output but most ...
written 5.5 years ago by aravind ramesh500
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Comment: C: Protein Modelling-Below 20% Identity
... Try fold prediction servers ...
written 5.5 years ago by aravind ramesh500
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Comment: C: Estimate Substitution Matrix With Paml
... This is not an answer. Its a comment. Little explanation makes an answer. ...
written 5.5 years ago by aravind ramesh500
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Comment: C: Estimate Substitution Matrix With Paml
... Do you want to generate a substitution matrix from a set of proteins ? ...
written 5.5 years ago by aravind ramesh500
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Comment: C: Nonsynonymous Mutation-Contig To Amino Acid Position
... Title of the question is really vague. Please correct it so that people will open and read your question. ...
written 5.5 years ago by aravind ramesh500
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Answer: A: Nonsynonymous Mutation-Contig To Amino Acid Position
... You can directly use the contig as input in Mutation Taster Translate the contig and align with protein sequence, will help u to find the amino acid position in the protein. For Translating For functional analysis of nsSNP a) HANSA (From our lab), b) PolyPhen c) Mutation Taster d) Condel e) ...
written 5.5 years ago by aravind ramesh500

Latest awards to aravind ramesh

Supporter 5.3 years ago, voted at least 25 times.
Commentator 6.1 years ago, created a comment with at least 3 up-votes. For C: Protein Hmm Profile In R/Python?
Teacher 6.2 years ago, created an answer with at least 3 up-votes. For A: Map The Protein Sequences Of Unknown Genes That Have Uniprot Names To Ensembl Ge
Teacher 6.3 years ago, created an answer with at least 3 up-votes. For A: How To Reformat A Fasta File To A Custom Tabular Format
Appreciated 6.7 years ago, created a post with more than 5 votes. For A: Best Genome Browser?
Teacher 6.7 years ago, created an answer with at least 3 up-votes. For A: Best Genome Browser?

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