User: michele.zocchi

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Posts by michele.zocchi

<prev • 6 results • page 1 of 1 • next >
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Answer: A: How to check for the presence/absence of unique rows in two different matrices?
... Hi! I think I solved using dplyr and the function "semi_join", which keeps the matching rows from the two matrices and the column of only one. Thank you for your answers! ...
written 11 days ago by michele.zocchi0
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Comment: A: How to check for the presence/absence of unique rows in two different matrices?
... Thank you for your answer! I tried your code but actually it is not properly fitted for what I need, because it will merge the columns of the two matrices, while my aim is basically to remove some of the rows from the beta value matrix with the control probes (that i want to remove) and that are ab ...
written 11 days ago by michele.zocchi0
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How to check for the presence/absence of unique rows in two different matrices?
... Hi to everybody! I'll explain my problem. I have two matrices with data from illumina 850 methylation chip. The person that performed the analysis, gave me a matrix with beta values with cytosine names for rows and samples for columns. My problem is that among the cytosines, there are also the con ...
r studio R matrix bioinformatics written 11 days ago by michele.zocchi0
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Comment: A: How to create a proper design matrix/contrast matrix for methylation 850k analys
... I will try, thank you very much!! 😁 ...
written 20 days ago by michele.zocchi0
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Comment: A: How to create a proper design matrix/contrast matrix for methylation 850k analys
... Thank you for your answer! Probably I have explained the experiment in the wrong way, I have four samples like this: Not Induced : si-Ctrl , si-Gene Induced : si-Ctrl , si-Gene. In this way, I have also a sample in which the effects of the two conditions are combined. But I think that more or les ...
written 20 days ago by michele.zocchi0
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How to create a proper design matrix/contrast matrix for methylation 850k analysis in limma?
... Hi to everyone, I'm totally new to bioinformatics but I'm trying to learn. Recently, I received data from an Illumina 850k analysis of DNA methylation and I'm trying to work on them using R. At the moment, I'm following the tutorial published on this paper: https://f1000research.com/articles/5-1281 ...

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