User: Dhara Awasthi

gravatar for Dhara Awasthi
Reputation:
20
Status:
New User
Location:
Indian Institute of Technology, Jodhpur
Last seen:
1 day, 12 hours ago
Joined:
9 months, 3 weeks ago
Email:
d***********@gmail.com

Posts by Dhara Awasthi

<prev • 34 results • page 1 of 4 • next >
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Comment: C: Convert CSV to PED
... The problem is fixed. Thank you Kevin! :) ...
written 11 days ago by Dhara Awasthi20
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Comment: C: Convert CSV to PED
... Thank you Kevin for the valuable response but I am still getting the same error. ...
written 12 days ago by Dhara Awasthi20
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How to apply Robust PCA to SNP (HapMap) data?
... Hello Everyone! I am trying to apply robust PCA method to SNP data (HapMap data) to cope with population stratification. I read a paper published in 2020 and it says that this is the first time Robust statistics has been applied to RNA seq data analysis. The link is [here][1]. I get the idea that t ...
rpca robustpca hapmap3 written 12 days ago by Dhara Awasthi20
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Comment: C: problem installing HapMap package in python
... Pip 20.2.2 Python 3.7 ...
written 13 days ago by Dhara Awasthi20
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problem installing HapMap package in python
... Hi, I tried installing HapMap package using pip install HapMap but I am getting this error: **ERROR: Could not find a version that satisfies the requirement HapMap (from versions: none) ERROR: No matching distribution found for HapMap** I also searched for downloading HapMap package but couldn't ...
python hapmap3 written 13 days ago by Dhara Awasthi20
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Comment: C: Convert CSV to PED
... I also tried converting my CSV into TSV and got an error : Error: Invalid chromosome code '17press' on line 1 of .map file. (Use --allow-extra-chr to force it to be accepted.) Then, I used --allow-extra-chr and I got another error : Error: Invalid bp coordinate on line 1 of .map file. Then I manu ...
written 18 days ago by Dhara Awasthi20
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Comment: C: Convert CSV to PED
... No Kevin. It does not have any unicode or unusual characters. ...
written 18 days ago by Dhara Awasthi20
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Comment: C: Convert CSV to PED
... FYI, all my files have been created on Linux . ...
written 18 days ago by Dhara Awasthi20
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Comment: C: Convert CSV to PED
... Hi Kevin, I did not understand what you mean by "no hidden carriage returns like ^M - try dos2unix" ? ...
written 18 days ago by Dhara Awasthi20
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Comment: C: Convert CSV to PED
... To make you understand better, I am pasting a few columns of my ped and map file here below. Here is how my ped (.csv) file looks like. The respective columns are: IID,FID,PID, MID, Sex, Phenotype, SNP 1 1 0 0 2 1 TC TT AA AG CA CA AG GG GG GG CC GA TC TC GG 2 2 0 0 2 1 TC TT AA AA CA CA ...
written 18 days ago by Dhara Awasthi20 • updated 18 days ago by Kevin Blighe67k

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