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questions
0
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724
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How to apply Robust PCA to SNP (HapMap) data?
rpca
robustpca
hapmap3
3.4 years ago by
Dhara Awasthi
▴ 40
0
votes
3
replies
905
views
problem installing HapMap package in python
python
HapMap3
3.4 years ago by
Dhara Awasthi
▴ 40
6
votes
13
replies
4.3k
views
Convert CSV to PED
gwas
plink
3.5 years ago by
Dhara Awasthi
▴ 40
0
votes
0
replies
517
views
calculate mutual information between pairs of SNPs
feature selection
mutual information
3.5 years ago by
Dhara Awasthi
▴ 40
0
votes
0
replies
657
views
SNP encoding for classification
SNP
encoding
Machine Learning
3.5 years ago by
Dhara Awasthi
▴ 40
0
votes
0
replies
692
views
Help with PLINK
PLINK
GWAS
3.5 years ago by
Dhara Awasthi
▴ 40
2
votes
1
reply
1.6k
views
PLINK basic command line usage
PLINK
updated 3.5 years ago by
zx8754
11k • written 3.5 years ago by
Dhara Awasthi
▴ 40
1
vote
1
reply
936
views
Annotated txt and csv files show empty columns in SIFT,Polyphen2, Mutation tester and other columns
annotation
annovar
3.5 years ago by
Dhara Awasthi
▴ 40
2
votes
3
replies
865
views
summarize_annovar perl script download
annovar
annotation
updated 3.5 years ago by
Ram
43k • written 3.5 years ago by
Dhara Awasthi
▴ 40
0
votes
1
reply
769
views
Empty avinput files corresponding to multisamples in ANNOVAR
annovar
annotation
1000g
3.5 years ago by
Dhara Awasthi
▴ 40
3
votes
1
reply
2.0k
views
Annotate multiple sample vcf files at once using ANNOVAR
annovar
1000g
annotation
updated 3.5 years ago by
Kevin Blighe
87k • written 3.5 years ago by
Dhara Awasthi
▴ 40
0
votes
3
replies
1.7k
views
table_annovar.pl script shows error
annovar
1000g
annotation
updated 3.5 years ago by
Kevin Blighe
87k • written 3.5 years ago by
Dhara Awasthi
▴ 40
0
votes
3
replies
941
views
extract vcf files of each individuals from ALL.chr3.phase1_release_v3.20101123.snps_indels_svs.genotypes.vcf.gz using command
vcf
annovar
annotation
1000g
3.5 years ago by
Dhara Awasthi
▴ 40
0
votes
1
reply
683
views
annovar continues to use hg18 version despite using buildver hg19 argument
annovar
annotation
1000g
3.5 years ago by
Dhara Awasthi
▴ 40
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