User: yinbinqiu

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yinbinqiu0
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Posts by yinbinqiu

<prev • 8 results • page 1 of 1 • next >
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Using noisy error in centos
... I get multiple singlecopy nucleic acid sequence files according to orthofinder, and then use prank to get multiple xxx.fas files When I use **noisy xxx.fas --cutoff 0.4** *Segmentation fault (core dumped)* error message appears how can I solve this? Thanks in advance. ![enter image description her ...
software error phylogenetic evolution noisy written 9 weeks ago by yinbinqiu0
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Comment: C: Orthofinder:How to obtain single copy homologous sequences from result files
... Thank you very much. It solved my problem. ...
written 9 weeks ago by yinbinqiu0
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Comment: C: Orthofinder:How to obtain single copy homologous sequences from result files
... I have obtained single copy orthogroups and corresponding amino acid sequence files containing orthogroups. How can I obtain the corresponding nucleotide sequence based on the id of these amino acid sequence files (such as XPxxxx of species A)? Thanks in advance. ...
written 9 weeks ago by yinbinqiu0
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Comment: A: Question about blastx output
... got it, thank you very much. ...
written 10 weeks ago by yinbinqiu0
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Comment: A: Orthofinder:How to obtain single copy homologous sequences from result files
... Hello, I want to know how do you sort out the sequence IDs contained in each homology group after you get the OrthologsIDS.txt file? thank you very much ...
written 10 weeks ago by yinbinqiu0
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Question about blastx output
... hi, all, I used diamond blastx to compare my transcript to the uniprot database, the command is as follows diamond blastx -d uniprotdb.dmnd -q xxx.fa -e 1e-5 -f 6 -b 10 -o ./xxx.outfmt6 --max-target-seqs 1 The output has 12 columns, which are query id, subject id,% identity, alignment length, ...
assembly blastx rna-seq trinity written 3 months ago by yinbinqiu0
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transrate error about salmon version
... hi, all When using software transrate to analyze the quality of the transcript assembled from scratch, the command used is **transrate --assembly xxx.fa --left left_fq.gz --right right_fq.gz --output ./** Found that the salmon version reported an error, Initially the following error occurred ...
software error assembly rna-seq written 3 months ago by yinbinqiu0 • updated 3 months ago by ATpoint35k
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Answer: A: Is it possible to get taxonomy identifiers from diamond output without using --t
... Have you solved this problem? ...
written 3 months ago by yinbinqiu0

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