User: mikyatope

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mikyatope0
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Posts by mikyatope

<prev • 9 results • page 1 of 1 • next >
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Comment: C: GenomeStrip testinstall error
... Thanks! Silly question now I see, I was looking only at the ERROR marks ...
written 4.3 years ago by mikyatope0
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Comment: C: GenomeStrip testinstall error
... Indeed it was the internet connection, running in the login node gave no problems at all. May I ask you what gave you the hint that the problem was the connection?? Thanks! ...
written 4.3 years ago by mikyatope0
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Comment: C: GenomeStrip testinstall error
... yes, the working nodes have no external connection. It could be difficult to run in a login node... it's really mandatory the internet access?   ...
written 4.3 years ago by mikyatope0
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Comment: C: GenomeStrip testinstall error
... Thanks! It's quite long, and over the character limit so I linked it here: http://jpst.it/weUB ...
written 4.3 years ago by mikyatope0
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GenomeStrip testinstall error
... I'm trying to run GenomeStrip (v1.04.14), but the install tests fail with many errors. The output is this: http://jpst.it/weUB Any clue on what I should look into first??? thanks!   EDIT: Version 2.0 released yesterday doesn't seem to have this issue ...
software error genomestrip written 4.3 years ago by mikyatope0
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Comment: C: How To Detect Overlaping Indels In Vcf File?
... Thanks for the explanation! I'll surely give it a try ...
written 6.5 years ago by mikyatope0
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Comment: C: How To Detect Overlaping Indels In Vcf File?
... interesting, but my file is 10Gb, does Galaxy support those upload sizes? ...
written 6.5 years ago by mikyatope0
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Comment: C: How To Detect Overlaping Indels In Vcf File?
... sorry, but it seems that bedop only uses BED as input and I have VCF files ...
written 6.5 years ago by mikyatope0
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How To Detect Overlaping Indels In Vcf File?
... Hi all, I have a vcf file with indels from a whole genome analysis and I want to detect overlapping between indels... I tried to use BEDtools-intersect but it asks for 2 files, and I only have a single file. Before trying the option of giving the same file 2 times to BEDtools-intersect maybe someon ...
indel vcf written 6.5 years ago by mikyatope0 • updated 6.5 years ago by Ashutosh Pandey11k

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Popular Question 4.2 years ago, created a question with more than 1,000 views. For How To Detect Overlaping Indels In Vcf File?

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