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10x VDJ (TCR/BCR) BAM to fastq
TCR
VDJ
BCR
10x
updated 6 days ago by
GenoMax
141k • written 6 days ago by
predeus
★ 1.9k
0
votes
1
reply
7.0k
views
Comment:
Comment: Differences between SMART-seq2, SMART-seq3, and 10x
4 weeks ago by
predeus
★ 1.9k
0
votes
1
reply
7.0k
views
Comment:
Comment: Differences between SMART-seq2, SMART-seq3, and 10x
4 weeks ago by
predeus
★ 1.9k
0
votes
0
replies
16k
views
Comment:
Comment: Issues installing bcl2fastq?
7 weeks ago by
predeus
★ 1.9k
0
votes
2
replies
16k
views
Answer:
Answer: Issues installing bcl2fastq?
7 weeks ago by
predeus
★ 1.9k
0
votes
0
replies
616
views
Comment:
Comment: API way to find "Original submitter" files in SRA?
9 weeks ago by
predeus
★ 1.9k
2
votes
5
replies
616
views
API way to find "Original submitter" files in SRA?
fastq
SRA
9 weeks ago by
predeus
★ 1.9k
1
vote
0
replies
616
views
Answer:
Answer: API way to find "Original submitter" files in SRA?
9 weeks ago by
predeus
★ 1.9k
0
votes
1
reply
616
views
Comment:
Comment: API way to find "Original submitter" files in SRA?
10 weeks ago by
predeus
★ 1.9k
0
votes
0
replies
1.7k
views
Answer:
Answer: Get original format information from SRA metadata
10 weeks ago by
predeus
★ 1.9k
0
votes
0
replies
871
views
Comment:
Comment: Samtools filtering based on PNEXT
5 months ago by
predeus
★ 1.9k
0
votes
1
reply
871
views
Comment:
Comment: Samtools filtering based on PNEXT
5 months ago by
predeus
★ 1.9k
1
vote
7
replies
871
views
Samtools filtering based on PNEXT
CRAM
filtering
samtools
SAM
BAM
updated 5 months ago by
Istvan Albert
100k • written 5 months ago by
predeus
★ 1.9k
0
votes
0
replies
871
views
Comment:
Comment: Samtools filtering based on PNEXT
5 months ago by
predeus
★ 1.9k
0
votes
1
reply
2.3k
views
Comment:
Comment: Basecalling with dorado
6 months ago by
predeus
★ 1.9k
0
votes
0
replies
3.0k
views
Comment:
Comment: Bacterial morphology details
8 months ago by
predeus
★ 1.9k
3
votes
1
reply
733
views
R package to link NCBI taxonomy ID to bacterial properties (Gram stain, aerobe/anaerobe, etc)
R
NCBI
bacteria
taxonomy
updated 8 months ago by
Philipp Bayer
8.3k • written 8 months ago by
predeus
★ 1.9k
0
votes
0
replies
947
views
Answer:
Answer: SRA obtained metagenomic reads appears to corrupt - cannot work on SingleM
8 months ago by
predeus
★ 1.9k
2
votes
0
replies
661
views
Answer:
Answer: How can I figure out where a mouse (C57BL/6J) genome is heterozygous?
8 months ago by
predeus
★ 1.9k
0
votes
0
replies
636
views
Comment:
Comment: snRNA seq analysis - huge computational demand due to large number of entries
8 months ago by
predeus
★ 1.9k
0
votes
1
reply
636
views
Answer:
Answer: snRNA seq analysis - huge computational demand due to large number of entries
8 months ago by
predeus
★ 1.9k
0
votes
0
replies
1.5k
views
Comment:
Comment: Merge BAM files from (totally) different references
8 months ago by
predeus
★ 1.9k
0
votes
0
replies
1.5k
views
Comment:
Comment: Merge BAM files from (totally) different references
8 months ago by
predeus
★ 1.9k
0
votes
1
reply
1.5k
views
Comment:
Comment: Merge BAM files from (totally) different references
8 months ago by
predeus
★ 1.9k
0
votes
1
reply
1.5k
views
Comment:
Comment: Merge BAM files from (totally) different references
8 months ago by
predeus
★ 1.9k
0
votes
0
replies
1.5k
views
Comment:
Comment: Merge BAM files from (totally) different references
8 months ago by
predeus
★ 1.9k
1
vote
13
replies
1.5k
views
Merge BAM files from (totally) different references
bam
ngs
mapping
8 months ago by
predeus
★ 1.9k
0
votes
1
reply
1.5k
views
Comment:
Comment: Merge BAM files from (totally) different references
8 months ago by
predeus
★ 1.9k
0
votes
0
replies
411
views
Comment:
Comment: Clustered bacterial RefSeq?
9 months ago by
predeus
★ 1.9k
2
votes
2
replies
411
views
Clustered bacterial RefSeq?
refseq
clustering
ANI
bacteria
9 months ago by
predeus
★ 1.9k
0
votes
1
reply
704
views
Comment:
Comment: bbduk.sh trimmer with multiple input files
9 months ago by
predeus
★ 1.9k
1
vote
3
replies
704
views
bbduk.sh trimmer with multiple input files
bbduk
bbmap
bbtools
updated 9 months ago by
GenoMax
141k • written 10 months ago by
predeus
★ 1.9k
0
votes
0
replies
2.0k
views
Comment:
Comment: Whole blood single cell RNA-seq dataset?
12 months ago by
predeus
★ 1.9k
0
votes
0
replies
3.3k
views
Answer:
Answer: HISAT2 relaxing parameters?
12 months ago by
predeus
★ 1.9k
3
votes
3
replies
1.3k
views
Read counting in RSEM and Salmon (alignment mode)
quantification
RSEM
RNA-seq
Salmon
12 months ago by
predeus
★ 1.9k
2
votes
0
replies
1.3k
views
Answer:
Answer: Read counting in RSEM and Salmon (alignment mode)
12 months ago by
predeus
★ 1.9k
1
vote
0
replies
1.3k
views
Comment:
Comment: Read counting in RSEM and Salmon (alignment mode)
12 months ago by
predeus
★ 1.9k
0
votes
0
replies
359
views
Add HI:i:<n> tag to a BAM file
SAM
hisat2
STAR
tag
BAM
13 months ago by
predeus
★ 1.9k
2
votes
0
replies
809
views
Comment:
Comment: To batch correct or analyse separately?
14 months ago by
predeus
★ 1.9k
0
votes
2
replies
1.6k
views
Comment:
Comment: Automated way to pull representative/RefSeq genome using full species name?
16 months ago by
predeus
★ 1.9k
6
votes
10
replies
1.6k
views
Automated way to pull representative/RefSeq genome using full species name?
ncbi
taxonomy
refseq
updated 16 months ago by
LChart
3.9k • written 16 months ago by
predeus
★ 1.9k
0
votes
0
replies
705
views
Job:
Senior Bioinformatician at Wellcome Sanger Institute
UK
Sanger
updated 10 months ago by
Ram
43k • written 19 months ago by
predeus
★ 1.9k
0
votes
1
reply
32k
views
Comment:
Comment: Duplicates on Illumina
20 months ago by
predeus
★ 1.9k
0
votes
1
reply
1.6k
views
Comment:
Comment: bbduk paired-end RNA-seq trimming command
20 months ago by
predeus
★ 1.9k
2
votes
3
replies
1.6k
views
bbduk paired-end RNA-seq trimming command
rna-seq
paired-end
bbduk
trimming
adapter
updated 20 months ago by
GenoMax
141k • written 20 months ago by
predeus
★ 1.9k
0
votes
1
reply
3.0k
views
Answer:
Answer: SCTransform and differential gene expression
20 months ago by
predeus
★ 1.9k
2
votes
0
replies
1.6k
views
Comment:
Comment: Which aligner for human WGS
20 months ago by
predeus
★ 1.9k
0
votes
0
replies
933
views
Comment:
Comment: Specific case of "bedtools intersect"
2.0 years ago by
predeus
★ 1.9k
2
votes
4
replies
933
views
Specific case of "bedtools intersect"
bedtools
BAM
updated 10 months ago by
Ram
43k • written 2.0 years ago by
predeus
★ 1.9k
0
votes
1
reply
6.4k
views
Comment:
Comment: GEO datasets-Single cell RNAseq analysis using seurat
2.1 years ago by
predeus
★ 1.9k
280 results • Page
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