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384
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Answer: Answer: Unexpected spliced/unspliced percentages in scRNA-seq data
2 days ago by predeus ★ 2.1k
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1
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220
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Answer: Answer: Spliced and unspliced counts from HIVE scRNA-seq data
2 days ago by predeus ★ 2.1k
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0
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523
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Comment: Comment: Computational way to distinguish between polyA and total RNA bulk RNA-seq
24 days ago by predeus ★ 2.1k
3
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3
replies
523
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Computational way to distinguish between polyA and total RNA bulk RNA-seq
RNA-seq
24 days ago by predeus ★ 2.1k
5
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4
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6.0k
views
Kraken2 with Nanopore reads
kraken2 nanopore kraken
updated 4 months ago by ▴ 80 • written 3.5 years ago by ★ 2.1k
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1.2k
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Comment: Comment: Reporting of multimapping reads by STAR and Hisat2
6 months ago by predeus ★ 2.1k
0
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1
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1.2k
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Comment: Comment: Reporting of multimapping reads by STAR and Hisat2
6 months ago by predeus ★ 2.1k
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0
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2.5k
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Comment: Comment: Typical percentage of multimapping reads in human rna-seq?
6 months ago by predeus ★ 2.1k
1
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1
reply
1.2k
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Comment: Comment: Reporting of multimapping reads by STAR and Hisat2
6 months ago by predeus ★ 2.1k
0
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1
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1.2k
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Comment: Comment: Reporting of multimapping reads by STAR and Hisat2
6 months ago by predeus ★ 2.1k
3
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11
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1.2k
views
Reporting of multimapping reads by STAR and Hisat2
STAR Hisat2 multimapper
updated 6 months ago by ★ 1.3k • written 6 months ago by ★ 2.1k
1
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0
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237
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Codon usage bias analysis when comparing RNA-seq and proteome
rna-seq proteome codon-usage-bias
6 months ago by predeus ★ 2.1k
0
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1
reply
520
views
10x VDJ (TCR/BCR) BAM to fastq
TCR VDJ BCR 10x
updated 9 months ago by 148k • written 9 months ago by ★ 2.1k
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1
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11k
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Comment: Comment: Differences between SMART-seq2, SMART-seq3, and 10x
9 months ago by predeus ★ 2.1k
0
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1
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11k
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Comment: Comment: Differences between SMART-seq2, SMART-seq3, and 10x
9 months ago by predeus ★ 2.1k
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0
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18k
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Comment: Comment: Issues installing bcl2fastq?
10 months ago by predeus ★ 2.1k
2
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2
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18k
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Answer: Answer: Issues installing bcl2fastq?
10 months ago by predeus ★ 2.1k
0
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0
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966
views
Comment: Comment: API way to find "Original submitter" files in SRA?
11 months ago by predeus ★ 2.1k
2
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5
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966
views
API way to find "Original submitter" files in SRA?
fastq SRA
11 months ago by predeus ★ 2.1k
1
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0
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966
views
Answer: Answer: API way to find "Original submitter" files in SRA?
11 months ago by predeus ★ 2.1k
0
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1
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966
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Comment: Comment: API way to find "Original submitter" files in SRA?
11 months ago by predeus ★ 2.1k
0
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0
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2.0k
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Answer: Answer: Get original format information from SRA metadata
11 months ago by predeus ★ 2.1k
0
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0
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1.3k
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Comment: Comment: Samtools filtering based on PNEXT
14 months ago by predeus ★ 2.1k
0
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1
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1.3k
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Comment: Comment: Samtools filtering based on PNEXT
14 months ago by predeus ★ 2.1k
1
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7
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1.3k
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Samtools filtering based on PNEXT
CRAM filtering samtools SAM BAM
updated 14 months ago by 102k • written 14 months ago by ★ 2.1k
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0
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1.3k
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Comment: Comment: Samtools filtering based on PNEXT
14 months ago by predeus ★ 2.1k
0
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1
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4.1k
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Comment: Comment: Basecalling with dorado
15 months ago by predeus ★ 2.1k
0
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0
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3.4k
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Comment: Comment: Bacterial morphology details
16 months ago by predeus ★ 2.1k
3
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1
reply
937
views
R package to link NCBI taxonomy ID to bacterial properties (Gram stain, aerobe/anaerobe, etc)
R NCBI bacteria taxonomy
updated 17 months ago by 8.8k • written 17 months ago by ★ 2.1k
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0
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1.2k
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Answer: Answer: SRA obtained metagenomic reads appears to corrupt - cannot work on SingleM
17 months ago by predeus ★ 2.1k
2
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0
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927
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Answer: Answer: How can I figure out where a mouse (C57BL/6J) genome is heterozygous?
17 months ago by predeus ★ 2.1k
0
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0
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1.0k
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Comment: Comment: snRNA seq analysis - huge computational demand due to large number of entries
17 months ago by predeus ★ 2.1k
0
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1
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1.0k
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Answer: Answer: snRNA seq analysis - huge computational demand due to large number of entries
17 months ago by predeus ★ 2.1k
0
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0
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2.2k
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Comment: Comment: Merge BAM files from (totally) different references
17 months ago by predeus ★ 2.1k
0
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0
replies
2.2k
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Comment: Comment: Merge BAM files from (totally) different references
17 months ago by predeus ★ 2.1k
0
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1
reply
2.2k
views
Comment: Comment: Merge BAM files from (totally) different references
17 months ago by predeus ★ 2.1k
0
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1
reply
2.2k
views
Comment: Comment: Merge BAM files from (totally) different references
17 months ago by predeus ★ 2.1k
0
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0
replies
2.2k
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Comment: Comment: Merge BAM files from (totally) different references
17 months ago by predeus ★ 2.1k
1
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13
replies
2.2k
views
Merge BAM files from (totally) different references
bam ngs mapping
17 months ago by predeus ★ 2.1k
0
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1
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2.2k
views
Comment: Comment: Merge BAM files from (totally) different references
17 months ago by predeus ★ 2.1k
0
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0
replies
592
views
Comment: Comment: Clustered bacterial RefSeq?
17 months ago by predeus ★ 2.1k
2
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2
replies
592
views
Clustered bacterial RefSeq?
refseq clustering ANI bacteria
17 months ago by predeus ★ 2.1k
0
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1
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923
views
Comment: Comment: bbduk.sh trimmer with multiple input files
18 months ago by predeus ★ 2.1k
1
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3
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923
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bbduk.sh trimmer with multiple input files
bbduk bbmap bbtools
updated 18 months ago by 148k • written 19 months ago by ★ 2.1k
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0
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2.3k
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Comment: Comment: Whole blood single cell RNA-seq dataset?
20 months ago by predeus ★ 2.1k
0
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0
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3.9k
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Answer: Answer: HISAT2 relaxing parameters?
21 months ago by predeus ★ 2.1k
3
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3
replies
1.8k
views
Read counting in RSEM and Salmon (alignment mode)
quantification RSEM RNA-seq Salmon
21 months ago by predeus ★ 2.1k
2
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0
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1.8k
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Answer: Answer: Read counting in RSEM and Salmon (alignment mode)
21 months ago by predeus ★ 2.1k
1
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0
replies
1.8k
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Comment: Comment: Read counting in RSEM and Salmon (alignment mode)
21 months ago by predeus ★ 2.1k
0
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0
replies
484
views
Add HI:i:<n> tag to a BAM file
SAM hisat2 STAR tag BAM
22 months ago by predeus ★ 2.1k
291 results • Page 1 of 6
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