User: predeus

5

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4

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5.8k

views

kraken2 nanopore kraken

updated 3 months ago by ChillarAnand ▴ 80 • written 3.4 years ago by predeus ★ 2.1k

3

votes

11

replies

961

views

STAR Hisat2 multimapper

updated 5 months ago by rfran010 ★ 1.3k • written 5 months ago by predeus ★ 2.1k

1

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0

replies

209

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rna-seq proteome codon-usage-bias

5 months ago by predeus ★ 2.1k

0

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1

reply

485

views

TCR VDJ BCR 10x

updated 7 months ago by GenoMax 147k • written 7 months ago by predeus ★ 2.1k

2

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5

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911

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fastq SRA

9 months ago by predeus ★ 2.1k

1

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7

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1.2k

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CRAM filtering samtools SAM BAM

updated 13 months ago by Istvan Albert 102k • written 13 months ago by predeus ★ 2.1k

3

votes

1

reply

894

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R NCBI bacteria taxonomy

updated 15 months ago by Philipp Bayer 8.8k • written 15 months ago by predeus ★ 2.1k

1

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13

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2.0k

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bam ngs mapping

16 months ago by predeus ★ 2.1k

2

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2

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556

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refseq clustering ANI bacteria

16 months ago by predeus ★ 2.1k

1

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3

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888

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bbduk bbmap bbtools

updated 17 months ago by GenoMax 147k • written 17 months ago by predeus ★ 2.1k

3

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3

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1.8k

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quantification RSEM RNA-seq Salmon

19 months ago by predeus ★ 2.1k

0

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0

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461

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SAM hisat2 STAR tag BAM

20 months ago by predeus ★ 2.1k

6

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10

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2.0k

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ncbi taxonomy refseq

updated 24 months ago by LChart 4.6k • written 2.0 years ago by predeus ★ 2.1k

4

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3

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2.4k

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rna-seq paired-end bbduk trimming adapter

updated 2.3 years ago by GenoMax 147k • written 2.3 years ago by predeus ★ 2.1k

2

votes

4

replies

1.1k

views

bedtools BAM

updated 17 months ago by Ram 44k • written 2.6 years ago by predeus ★ 2.1k

1

vote

3

replies

795

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seqtk fastq sequence parsing

updated 2.7 years ago by cpad0112 21k • written 2.7 years ago by predeus ★ 2.1k

2

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3

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1.2k

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SRA Entrez-direct ENA Entrez

3.0 years ago by predeus ★ 2.1k

6

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10

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2.2k

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long-reads illumina genome-assembly

updated 8 months ago by Ram 44k • written 3.2 years ago by predeus ★ 2.1k

4

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3

replies

1.4k

views

cycle-correction single-cell regression scRNA-seq bias

updated 3.2 years ago by Friederike 9.0k • written 3.2 years ago by predeus ★ 2.1k

1

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3

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1.3k

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scRNA-seq single cell RNA-Seq

updated 3.2 years ago by bosun1988 • 0 • written 3.8 years ago by predeus ★ 2.1k

1

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2

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1.1k

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metagenomics WGS pipeline bacterial

3.3 years ago by predeus ★ 2.1k

4

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9

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2.2k

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samtools bam

3.5 years ago by predeus ★ 2.1k

4

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5

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2.3k

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RNA-Seq scRNA-Seq whole blood single cell

19 months ago by predeus ★ 2.1k

4

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5

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5.2k

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exome agilent roche nimblegen illumina

updated 3.8 years ago by jon.klonowski ▴ 210 • written 7.1 years ago by predeus ★ 2.1k

1

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5

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1.2k

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RNA-Seq scRNA-Seq single cell non-model organism

3.8 years ago by predeus ★ 2.1k

3

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6

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2.0k

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microarray GEO gene expression omnibus

4.5 years ago by predeus ★ 2.1k

12

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4

replies

3.9k

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multiple-sequence-alignment 16S multiple-alignment

updated 18 months ago by Ram 44k • written 4.6 years ago by predeus ★ 2.1k

1

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3

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1.0k

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provean sift polyphen missense sift4g

4.6 years ago by predeus ★ 2.1k

1

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2

replies

900

views

meme meme-chip meme suite motif chip-seq

updated 4.7 years ago by Asaf 10k • written 4.7 years ago by predeus ★ 2.1k

2

votes

2

replies

930

views

phylogeny tree eukaryote

updated 5.0 years ago by Vitis ★ 2.6k • written 5.0 years ago by predeus ★ 2.1k

7

votes

5

replies

1.4k

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annotation eukaryotic gene prediction

updated 5.2 years ago by Biostar 20 • written 5.3 years ago by predeus ★ 2.1k

25

votes

25

replies

13k

views

11 follow

visualization whole-genome alignment mauve harvest

updated 5.5 years ago by gina • 0 • written 6.7 years ago by predeus ★ 2.1k

16

votes

7

replies

11k

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GEO SRA GSM GSE SRAdb

updated 5.5 years ago by Helen ▴ 60 • written 7.7 years ago by predeus ★ 2.1k

12

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6

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9.3k

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Assembly nanopore polishing

updated 5.6 years ago by sullis02 ▴ 40 • written 6.5 years ago by predeus ★ 2.1k

8

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6

replies

2.6k

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Assembly Bandage long reads Unicycler

updated 5.8 years ago by Biostar 20 • written 6.0 years ago by predeus ★ 2.1k

0

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2

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2.0k

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blocking primers PCR amplification

updated 6.1 years ago by lufiealf • 0 • written 6.8 years ago by predeus ★ 2.1k

1

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3

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1.1k

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sequence clustering blast

6.1 years ago by predeus ★ 2.1k

5

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6

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3.8k

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pfam COG enzyme protein

6.1 years ago by predeus ★ 2.1k

2

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4

replies

2.1k

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pacbio nanopore Assembly diploid

updated 6.2 years ago by harish ▴ 470 • written 6.3 years ago by predeus ★ 2.1k

1

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1

reply

2.1k

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bacteria pacbio pilon illumina

6.7 years ago by predeus ★ 2.1k

5

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7

replies

3.4k

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prokka bacteria annotation

updated 6.8 years ago by Asaf 10k • written 6.8 years ago by predeus ★ 2.1k

2

votes

4

replies

1.6k

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bioperl fasta fastq

updated 7.3 years ago by Chris Fields ★ 2.2k • written 7.3 years ago by predeus ★ 2.1k

0

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0

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1.2k

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rRNA multiple-alignment SILVA

updated 18 months ago by Ram 44k • written 7.4 years ago by predeus ★ 2.1k

110

votes

81

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36k

views

17 follow

duplicates illumina

updated 2.3 years ago by GenoMax 147k • written 7.9 years ago by predeus ★ 2.1k

2

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1

reply

1.4k

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RNA-Seq IGV

8.0 years ago by predeus ★ 2.1k

6

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5

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3.2k

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ngs wgs genome assembly

8.0 years ago by predeus ★ 2.1k

2

votes

10

replies

1.7k

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ngs adapter blastn

updated 8.0 years ago by Farbod ★ 3.4k • written 8.0 years ago by predeus ★ 2.1k

2

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4

replies

1.6k

views

RNA-Seq ChIP-Seq WES WGS

updated 8.6 years ago by Biostar 20 • written 8.6 years ago by predeus ★ 2.1k

1

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4

replies

2.1k

views

exome WGS WES resequencing VCF

updated 8.6 years ago by abascalfederico ★ 1.2k • written 8.6 years ago by predeus ★ 2.1k

0

votes

2

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1.9k

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loop-design Agilent microarray

updated 2.2 years ago by Ram 44k • written 9.2 years ago by predeus ★ 2.1k