User: somnja

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somnja0
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Posts by somnja

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Answer: A: How to extract reads from a particular gene from a metagenome
... Hey, i don'have an answer for you, but am having the same problem currently. I want to extract specific reads from specific genes from an unassembled metagenome. Did you find an answer yet? So far i am thinking of either using blast with a small database of reference sequences of that gene, or map ...
written 6 months ago by somnja0
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Use pre-assembled paired-end reads as single-end for metagenome assembly with metaSPAdes
... Hey, i am tasked with assembling a metagenome. From my predecessor i got in fasta format one file that contains: 1) normal paired-end reads (forward and reverse), about 75 mio reads each, read length 20-135 bp 2) some pre-assembled reads, where forward and reverse read were assembled into 1 read. ...
assembly metaspades metagenomics sequencing written 8 months ago by somnja0

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