User: cseplomarton

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Posts by cseplomarton

<prev • 5 results • page 1 of 1 • next >
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Big difference in chromosome number/SNP variants
... Hi everyone! I made an SNP variant analysis on my c.auris genomes(B11220). A get the reference genome from NCBI. I want to choose one or two SNP transition and check the involved genes function in the original genome. I find this to check it (http://www.candidagenome.org/download/chromosomal_featur ...
genome gene alignment snp written 4 weeks ago by cseplomarton0
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Which one is the better tutorial for SNP variant analysis / setting variant calling softwers
... Hi everyone! I need to find certain SNPs beetween my fungal genomes. I checked the https://github.com/ekg/alignment-and-variant-calling-tutorial and the https://galaxyproject.github.io/training-material/topics/variant-analysis/tutorials/dip/tutorial.html tutorials. I had problems with the first one ...
snp written 3 months ago by cseplomarton0 • updated 3 months ago by dudedna0
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Comment: C: Variant calling: Sambama sort command not found
... Thanks for the tip! I will check it. ...
written 3 months ago by cseplomarton0
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Comment: C: Variant calling: Sambama sort command not found
... Thank you too! I seen this "anaconda" earlier and it seems very useful. ...
written 3 months ago by cseplomarton0
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Variant calling: Sambama sort command not found
... Hi everyone! However, I previosly installed sambamba (https://github.com/biod/sambamba), the terminal can't find sambamba commads. I looked after the problem, but it is still unsolved (if it matters, I try reproduce this tutorial: https://github.com/ekg/alignment-and-variant-calling-tutorial). Ca ...
alignment snp written 3 months ago by cseplomarton0 • updated 3 months ago by Martina30

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