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Comment: Comment: How to generate a bam file with reads of only a certain length?
2.6 years ago by Medhat 9.8k
0
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0
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910
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Comment: Comment: how to visulize structure variants
2.6 years ago by Medhat 9.8k
2
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1
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910
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Answer: Answer: how to visulize structure variants
2.6 years ago by Medhat 9.8k
1
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2
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4.9k
views
Using PRINSEQ lite with zipped paired-end illumina reads
prinseq next-gen-sequencing quality-reads Illumina
updated 2.7 years ago by • 0 • written 10.2 years ago by 9.8k
0
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0
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1.1k
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Comment: Comment: liftOver input file
2.8 years ago by Medhat 9.8k
0
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0
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1.9k
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Comment: Comment: How to extract reads that support the structural variants using the vcf file and
2.8 years ago by Medhat 9.8k
76
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14
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17k
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15 follow
Tutorial: List Of Bioinformatics Books
books
updated 22 months ago by 44k • written 11.6 years ago by 9.8k
0
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0
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1.9k
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Comment: Comment: Select variants that exist in all samples from a merged VCF file using bcftools
2.9 years ago by Medhat 9.8k
0
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1
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1.9k
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Comment: Comment: Select variants that exist in all samples from a merged VCF file using bcftools
2.9 years ago by Medhat 9.8k
1
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4
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1.9k
views
Select variants that exist in all samples from a merged VCF file using bcftools
SNVs bcftools
2.9 years ago by Medhat 9.8k
0
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1
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910
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Comment: Comment: Tool that finds direct DNA repeats with mismatches
3.3 years ago by Medhat 9.8k
0
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0
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1.3k
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Comment: Comment: Pipeline version control system, pipeline storage
3.3 years ago by Medhat 9.8k
2
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3
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3.1k
views
error while using plant ensembl biomart
software error gene ensembl biomart
updated 3.3 years ago by • 0 • written 7.1 years ago by 9.8k
0
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0
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667
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Answer: Answer: Retrieve reads overlapping indels
3.4 years ago by Medhat 9.8k
20
votes
12
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40k
views
7 follow
Forum: When To Use Sed Awk Over Perl Or Python
perl python awk
updated 21 months ago by 44k • written 11.0 years ago by 9.8k
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0
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2.4k
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Comment: Comment: install R package
3.5 years ago by Medhat 9.8k
0
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0
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1.7k
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Comment: Comment: error on extracting a snp from vcf file using bcftools
3.5 years ago by Medhat 9.8k
0
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1
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1.7k
views
Comment: Comment: error on extracting a snp from vcf file using bcftools
3.5 years ago by Medhat 9.8k
0
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0
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1.7k
views
Answer: Answer: error on extracting a snp from vcf file using bcftools
3.5 years ago by Medhat 9.8k
0
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0
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789
views
Job: Postdoctoral Associate , Baylor College of Medicine, Human Genome Sequencing Center, Houston, United States
TGS NGS
updated 3.5 years ago by 44k • written 3.5 years ago by 9.8k
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0
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1.1k
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Comment: Comment: Bioinformatician
3.5 years ago by Medhat 9.8k
0
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1
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2.1k
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Comment: Comment: HISAT2 Genome indexing
3.6 years ago by Medhat 9.8k
2
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1
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1.7k
views
Samtools reheader Numerical result out of range
samtools header bam
3.6 years ago by Medhat 9.8k
2
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0
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1.7k
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Answer: Answer: Samtools reheader Numerical result out of range
3.6 years ago by Medhat 9.8k
0
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0
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1.1k
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Comment: Comment: Why we have exons that start and end at the same coordinate?!
3.7 years ago by Medhat 9.8k
2
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2
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1.1k
views
Why we have exons that start and end at the same coordinate?!
gtf exon GRCh38
updated 3.7 years ago by 47k • written 3.7 years ago by 9.8k
0
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0
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1.6k
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Comment: Comment: Gene Labels (ggplot2)
3.7 years ago by Medhat 9.8k
1
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1
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1.9k
views
Answer: Comment: Select one variant from multiple in ALT in VCF file
3.7 years ago by Medhat 9.8k
0
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1
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1.0k
views
Comment: C: how to use unix tools to convert VCF genotypes like '1|1' to this '2'
3.8 years ago by Medhat 9.8k
0
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0
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1.0k
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Comment: C: Structural variations intersection
3.8 years ago by Medhat 9.8k
1
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1
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3.2k
views
Comment: C: Problem using PicardTools MarkDuplicates: SortingCollection: There is not enough
3.8 years ago by Medhat 9.8k
0
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1
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1.4k
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Comment: C: Extracting the Best sequence per genomic region in a genome based on the Best e-
3.8 years ago by Medhat 9.8k
2
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0
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1.4k
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Answer: C: Extracting the Best sequence per genomic region in a genome based on the Best e-
3.8 years ago by Medhat 9.8k
0
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0
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1.2k
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Comment: C: fastqc report and quality check
3.8 years ago by Medhat 9.8k
1
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0
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2.1k
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Comment: C: Pacific Bio Long Reads vs Illumina Short Reads
3.8 years ago by Medhat 9.8k
2
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0
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2.1k
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Comment: C: Pacific Bio Long Reads vs Illumina Short Reads
3.8 years ago by Medhat 9.8k
0
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0
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3.7k
views
Comment: C: Mappability file for hg38
3.9 years ago by Medhat 9.8k
2
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2
replies
3.7k
views
Mappability file for hg38
sequence mappabilit
3.9 years ago by Medhat 9.8k
1
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2
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3.8k
views
What do you use to generates summary statistics of sequence and quality data for PacBio?
genome sequence Assembly pacbio next-gen
updated 3.0 years ago by 44k • written 10.3 years ago by 9.8k
0
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0
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1.9k
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Comment: C: how to change header of fasta file
4.2 years ago by Medhat 9.8k
0
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0
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4.6k
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Comment: C: Kraken2 Error in buildind NCBI bacterial database
4.2 years ago by Medhat 9.8k
1
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2
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4.6k
views
Answer: C: Kraken2 Error in buildind NCBI bacterial database
4.2 years ago by Medhat 9.8k
2
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1
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4.1k
views
Answer: A: bcftools error duplicate samples
4.2 years ago by Medhat 9.8k
0
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0
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4.7k
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Comment: C: Things you wish you knew when entering the bioinformatics field
4.2 years ago by Medhat 9.8k
2
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1
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4.7k
views
Comment: C: Things you wish you knew when entering the bioinformatics field
4.2 years ago by Medhat 9.8k
1
vote
0
replies
982
views
Job: PostDoc position at Human Genome Sequencing Center @ Baylor College of Medicine, Houston, TX, USA
postdoc metagenomics
updated 18 months ago by 44k • written 4.2 years ago by 9.8k
4
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0
replies
4.6k
views
Comment: C: Converting MAF to Fasta
4.2 years ago by Medhat 9.8k
0
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10
replies
4.1k
views
Tools for metagenomics classification using long reads
metagenomics sequen alignment
updated 4.3 years ago by ▴ 30 • written 6.6 years ago by 9.8k
0
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0
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1.4k
views
Comment: C: Understanding VCF : 0/0 v 0/1 v 1/0 v 1/1 etc
4.3 years ago by Medhat 9.8k
0
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0
replies
2.0k
views
Comment: C: Convert fastqc.gz file to BED file format
4.3 years ago by Medhat 9.8k
1,013 results • Page 2 of 21
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