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0
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Is it reasonable to do "Gene Regulatory Network Inference" for each cell type and do differential GRN
GRN scRNA-seq
4 months ago by shangguandong1996 ▴ 30
9
votes
3
replies
442
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what's the disadvantage of removing cell-cylcle gene compared with regressing out
scRNA-seq
updated 5 months ago by ★ 14k • written 6 months ago by ▴ 30
0
votes
1
reply
238
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multiple Sequence Alignment tools for cis-element
MSA cis-element
updated 7 months ago by 14k • written 7 months ago by ▴ 30
1
vote
4
replies
481
views
how to link hmmalign result and FastTree or other Tree tools
FastTree hmmalign Phylogenetic_tree
8 months ago by shangguandong1996 ▴ 30
0
votes
0
replies
250
views
How can I build archetypal consensus motifs to represent different cluster motifs
motif
13 months ago by shangguandong1996 ▴ 30
5
votes
3
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1.0k
views
Is there any software that can use ATAC-seq to identify super enhancer
ATAC-seq enhancer super
updated 16 months ago by ★ 14k • written 16 months ago by ▴ 30
0
votes
0
replies
312
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What's the biology meaning of multi-peak in a region
peak ATAC
17 months ago by shangguandong1996 ▴ 30
5
votes
12
replies
2.4k
views
weird MAplot or volcano plot of DESeq2 diff result
RNA-seq DESeq2
17 months ago by shangguandong1996 ▴ 30
2
votes
5
replies
651
views
Is it appropriate to resize peak before ATAC/ChIP-Seq differential peak analysis
ATAC
updated 19 months ago by ★ 1.2k • written 19 months ago by ▴ 30
0
votes
0
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858
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how to combined peak score or other quantitative indicator when identify TF target gene
ChIP-Seq
21 months ago by shangguandong1996 ▴ 30
3
votes
4
replies
885
views
how to extract REF and ALT DNA string around SNV
SNV motif
21 months ago by shangguandong1996 ▴ 30
12
votes
15
replies
987
views
6 follow
Is there other IDE like R studio working on the linux?
Rstudio R bioinformatics bioconductor
23 months ago by shangguandong1996 ▴ 30
0
votes
1
reply
359
views
how to make BBmerge produce same strand fastq file
BBmerge
23 months ago by shangguandong1996 ▴ 30
2
votes
2
replies
1.8k
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Should I use Z-score standardization or Min-Max scaling in biological data ?
scale heatmap
2.0 years ago by shangguandong1996 ▴ 30
2
votes
1
reply
701
views
how to compare two gene lfc rank is similar or opposite ?
RNA-Seq
updated 2.1 years ago by ▴ 160 • written 2.1 years ago by ▴ 30
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