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0
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Is it reasonable to do "Gene Regulatory Network Inference" for each cell type and do differential GRN
GRN scRNA-seq
8 days ago by shangguandong1996 ▴ 30
9
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3
replies
346
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what's the disadvantage of removing cell-cylcle gene compared with regressing out
scRNA-seq
updated 8 weeks ago by ★ 13k • written 8 weeks ago by ▴ 30
0
votes
1
reply
192
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multiple Sequence Alignment tools for cis-element
MSA cis-element
updated 3 months ago by 14k • written 3 months ago by ▴ 30
1
vote
4
replies
399
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how to link hmmalign result and FastTree or other Tree tools
FastTree hmmalign Phylogenetic_tree
4 months ago by shangguandong1996 ▴ 30
0
votes
0
replies
204
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How can I build archetypal consensus motifs to represent different cluster motifs
motif
9 months ago by shangguandong1996 ▴ 30
5
votes
3
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899
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Is there any software that can use ATAC-seq to identify super enhancer
ATAC-seq enhancer super
updated 12 months ago by ★ 13k • written 12 months ago by ▴ 30
0
votes
0
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264
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What's the biology meaning of multi-peak in a region
peak ATAC
13 months ago by shangguandong1996 ▴ 30
5
votes
12
replies
2.1k
views
weird MAplot or volcano plot of DESeq2 diff result
RNA-seq DESeq2
13 months ago by shangguandong1996 ▴ 30
2
votes
5
replies
581
views
Is it appropriate to resize peak before ATAC/ChIP-Seq differential peak analysis
ATAC
updated 15 months ago by ★ 1.2k • written 15 months ago by ▴ 30
0
votes
0
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791
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how to combined peak score or other quantitative indicator when identify TF target gene
ChIP-Seq
17 months ago by shangguandong1996 ▴ 30
3
votes
4
replies
775
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how to extract REF and ALT DNA string around SNV
SNV motif
18 months ago by shangguandong1996 ▴ 30
12
votes
15
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857
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6 follow
Is there other IDE like R studio working on the linux?
Rstudio R bioinformatics bioconductor
19 months ago by shangguandong1996 ▴ 30
0
votes
1
reply
308
views
how to make BBmerge produce same strand fastq file
BBmerge
19 months ago by shangguandong1996 ▴ 30
2
votes
2
replies
1.5k
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Should I use Z-score standardization or Min-Max scaling in biological data ?
scale heatmap
20 months ago by shangguandong1996 ▴ 30
2
votes
1
reply
631
views
how to compare two gene lfc rank is similar or opposite ?
RNA-Seq
updated 21 months ago by ▴ 150 • written 21 months ago by ▴ 30
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