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Comment: Comment: Bowtie2 Alignment with low percentage of properly paired reads (ATAC-seq)
18 months ago by Marco Pannone ▴ 790
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1.1k
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Comment: Comment: Exon counts do not match gene and transcript counts
18 months ago by Marco Pannone ▴ 790
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1.2k
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Comment: Comment: How to perform paired t-test in R for obtaining p-value of each gene?
18 months ago by Marco Pannone ▴ 790
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2
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1.1k
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Comment: Comment: ChIPQC error <<Unable to process. Each bam file must be associated with at most
18 months ago by Marco Pannone ▴ 790
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1
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1.1k
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Comment: Comment: ChIPQC error <<Unable to process. Each bam file must be associated with at most
18 months ago by Marco Pannone ▴ 790
1
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0
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697
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Comment: Comment: Bowtie 2 error- bowtie2-align died with signal 6 (ABRT): Help please!
18 months ago by Marco Pannone ▴ 790
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0
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655
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Comment: Comment: quality control chip-seq
18 months ago by Marco Pannone ▴ 790
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1
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667
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Comment: Comment: To order list of genes
18 months ago by Marco Pannone ▴ 790
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2.1k
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Comment: Comment: Pathway Score measurement in R
18 months ago by Marco Pannone ▴ 790
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576
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Comment: Comment: DESeq2. Multi-factor Interactions designs
19 months ago by Marco Pannone ▴ 790
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1.3k
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Comment: Comment: Convert Gene Ensemble IDs to Gene Symbols on R
19 months ago by Marco Pannone ▴ 790
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2
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1.3k
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Comment: Comment: Convert Gene Ensemble IDs to Gene Symbols on R
19 months ago by Marco Pannone ▴ 790
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1.3k
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Comment: Comment: Convert Gene Ensemble IDs to Gene Symbols on R
19 months ago by Marco Pannone ▴ 790
1
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1
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1.3k
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Answer: Answer: Convert Gene Ensemble IDs to Gene Symbols on R
19 months ago by Marco Pannone ▴ 790
1
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2
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716
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Answer: Answer: How to add line breaks before each ">" header line in fasta file
19 months ago by Marco Pannone ▴ 790
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0
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844
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Comment: Comment: Change of -t argument in featureCounts affecting annotation
19 months ago by Marco Pannone ▴ 790
0
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1
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844
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Comment: Comment: Change of -t argument in featureCounts affecting annotation
19 months ago by Marco Pannone ▴ 790
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4
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844
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Change of -t argument in featureCounts affecting annotation
rnaseq subread annotation featureCounts
19 months ago by Marco Pannone ▴ 790
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0
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740
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Comment: Comment: Deeptools comparing heatmap zMin and zMax across different plotHeatmaps
19 months ago by Marco Pannone ▴ 790
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1
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740
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Comment: Comment: Deeptools comparing heatmap zMin and zMax across different plotHeatmaps
19 months ago by Marco Pannone ▴ 790
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0
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4.4k
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Comment: Comment: Unable to install bioconda and bowtie
19 months ago by Marco Pannone ▴ 790
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0
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1.6k
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Comment: Comment: How to convert Ensemble Gene IDs to gene symbols or Entrez Gene IDs?
19 months ago by Marco Pannone ▴ 790
0
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1
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4.4k
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Comment: Comment: Unable to install bioconda and bowtie
19 months ago by Marco Pannone ▴ 790
0
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1
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4.4k
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Comment: Comment: Unable to install bioconda and bowtie
19 months ago by Marco Pannone ▴ 790
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0
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630
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Comment: Comment: calling peaks in ChIP-seq datasets from bedgraph files
19 months ago by Marco Pannone ▴ 790
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0
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706
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Comment: Comment: macs callpeak q value cutoff 1 and 0.05 with different peak result
19 months ago by Marco Pannone ▴ 790
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1
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796
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Comment: Comment: trimmomatic
19 months ago by Marco Pannone ▴ 790
1
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1
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873
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Answer: Answer: How can I filter genes >10 reads in at least 2 replicates
21 months ago by Marco Pannone ▴ 790
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0
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645
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Comment: Comment: Genome indexing
21 months ago by Marco Pannone ▴ 790
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1
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645
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Comment: Comment: Genome indexing
21 months ago by Marco Pannone ▴ 790
5
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1
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742
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Answer: Answer: How to extract the read counts after normalization with DESeq in R?
21 months ago by Marco Pannone ▴ 790
2
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0
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444
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Answer: Answer: Rare chromosomes list in VCF file
21 months ago by Marco Pannone ▴ 790
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0
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1.0k
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Comment: Comment: PlotHeatmap in deeptools horizontally
21 months ago by Marco Pannone ▴ 790
0
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1
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1.0k
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Comment: Comment: PlotHeatmap in deeptools horizontally
21 months ago by Marco Pannone ▴ 790
1
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1
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1.0k
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Comment: Comment: Increased GC content after trimming RNAseq data
21 months ago by Marco Pannone ▴ 790
2
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1
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1.0k
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Comment: Comment: PlotHeatmap in deeptools horizontally
21 months ago by Marco Pannone ▴ 790
1
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1
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1.9k
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Answer: Answer: gene set enrichment analysis
21 months ago by Marco Pannone ▴ 790
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0
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3.3k
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Comment: Comment: Cut&Run vs ChIP-seq pipeline
21 months ago by Marco Pannone ▴ 790
0
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1
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3.3k
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Comment: Comment: Cut&Run vs ChIP-seq pipeline
21 months ago by Marco Pannone ▴ 790
4
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5
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3.3k
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Cut&Run vs ChIP-seq pipeline
chip-seq cut-run
updated 21 months ago by 13k • written 21 months ago by ▴ 790
2
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1
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765
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Comment: Comment: Error in DiffBind
21 months ago by Marco Pannone ▴ 790
1
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0
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1.4k
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Comment: Comment: How to do GO enrichment analysis for Klebsiella pneumonia?
21 months ago by Marco Pannone ▴ 790
2
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1
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750
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Answer: Answer: DESeq2: Multiple disease condition vs Normal
22 months ago by Marco Pannone ▴ 790
0
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0
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330
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Explore transcription data of pseudogenes
pseudogenes transcriptome databases RNA-seq
22 months ago by Marco Pannone ▴ 790
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1
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1.1k
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Comment: Comment: Possible rRNA contamination in one sample
23 months ago by Marco Pannone ▴ 790
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1
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1.1k
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Comment: Comment: Possible rRNA contamination in one sample
23 months ago by Marco Pannone ▴ 790
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1
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1.1k
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Comment: Comment: Possible rRNA contamination in one sample
23 months ago by Marco Pannone ▴ 790
1
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1
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1.1k
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Comment: Comment: Are the top 50 features in heat map for each phenotype in dataset generated by G
23 months ago by Marco Pannone ▴ 790
0
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1
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1.1k
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Comment: Comment: Are the top 50 features in heat map for each phenotype in dataset generated by G
23 months ago by Marco Pannone ▴ 790
0
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0
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698
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Comment: Comment: BED file from GSEA gene set
23 months ago by Marco Pannone ▴ 790
194 results • Page 2 of 4
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