User: Matteo Dugo

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Posts by Matteo Dugo

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Answer: A: Discrepancies Between Biomart Package And Ncbi Database
... I've checked if all my unmapped RefSeq IDs are given obsolete by NCBI but that's not true. For example, with biomaRt package, transcript NM_001198531 is not associated with a gene symbol but on NCBI it is given as a reviewed transcript of gene TCF7L2. So i did a manual conversion of this RefSeq ID o ...
written 7.2 years ago by Matteo Dugo0
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Answer: A: Discrepancies Between Biomart Package And Ncbi Database
... Effectively when I searched for this transcript i only looked at the summary section of the web page where the RefSeq status is given as validated, but looking in the list of transcript for the GNAL gene my RefSeq query is not present and is given as suppressed. It would be useful to have this infor ...
written 7.2 years ago by Matteo Dugo0
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Discrepancies Between Biomart Package And Ncbi Database
... Hello everybody, i'm working with biomaRt bioconductor package in order to convert a list of RefSeq mRNA identifiers to official gene symbol. My query list is composed of 28890 unique RefSeq IDs and the output from the biomaRt query is of only 27533 RefSeq IDs, so seems that more than 1000 RefSeq tr ...
ncbi biomart conversion written 7.2 years ago by Matteo Dugo0

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