User: tommaso.green

Reputation:
0
Status:
New User
Last seen:
1 month, 2 weeks ago
Joined:
2 months, 1 week ago
Email:
t************@studenti.unipd.it

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by tommaso.green

<prev • 8 results • page 1 of 1 • next >
0
votes
0
answers
272
views
0
answers
Comment: C: Biopython Pairwise Alignment output
... Thank you very much for your help. You really helped a lot :) Have a good day! ...
written 9 weeks ago by tommaso.green0
0
votes
0
answers
272
views
0
answers
Comment: C: Biopython Pairwise Alignment output
... Gayachit thank you very much for your help. I have a couple of questions: a) Can I ask you to point out in the manual the part where it is specified that pairwise distance is used? I will probably need it for future reference b) Among the reputation of different bioinformatics software, is MEGA co ...
written 9 weeks ago by tommaso.green0
0
votes
0
answers
272
views
0
answers
Comment: C: Biopython Pairwise Alignment output
... Thanks to the both of you for your replies. I don't really have to use Biopython but I got intrigued by this library because I'm a huge Python fan. I'll try to explain what we have to do for our project. This group project is about building three phylogenies of Sars-CoV-2 using different techniques ...
written 9 weeks ago by tommaso.green0
0
votes
0
answers
272
views
0
answers
Comment: C: Biopython Pairwise Alignment output
... I know about the header, the thing is that AlignIO.write() function takes care of that too but it only works for multiple sequence alignments not pairwise. Anyways I'm probably abandoning Python for this project (see other answer below). ...
written 9 weeks ago by tommaso.green0
0
votes
0
answers
272
views
0
answers
Comment: C: Biopython Pairwise Alignment output
... Thank you Fatima for your kind attention. I just started a bioinformatics course and I didn't expect this much help and interest. You'll find attached a screenshot of the outputs you asked + the output of alignments[0] (truncated for obvious reasons). I have some doubts about what I should really ...
written 9 weeks ago by tommaso.green0
0
votes
0
answers
272
views
0
answers
Comment: C: Biopython Pairwise Alignment output
... Yes indeed, but my problem is that I want to write all these alignments to a phylip file ...
written 9 weeks ago by tommaso.green0
0
votes
0
answers
272
views
0
answers
Comment: C: Biopython Pairwise Alignment output
... The main reason is I'm doing this project for a course and the prof recommended using global alignment since I'm trying to align RNA sequences of the same species (coronavirus). ...
written 9 weeks ago by tommaso.green0
7
votes
0
answers
272
views
0
answers
Biopython Pairwise Alignment output
... Hi, I'm trying to make several pairwise global alignments using biopython Pairwise Aligner. I'd like to store my results in a phylip format so that I can use the output to build a phylogenetic tree using Phylip. The problem is that I can't seem to be able to write my alignments using AlignIO packag ...
needleman biopython global alignment written 9 weeks ago by tommaso.green0

Latest awards to tommaso.green

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2101 users visited in the last hour