User: ete

gravatar for ete
ete100
Reputation:
100
Status:
Trusted
Location:
Germany
Last seen:
2 months ago
Joined:
7 years, 10 months ago
Email:
l*****@gmail.com

Posts by ete

<prev • 20 results • page 2 of 2 • next >
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Comment: C: Open source bioinformatics tools: Blaster, Primer Factory, Labtools
... Thanks for your comment and suggestions. Maybe some background information. I am a technician and in my free time I do some programming stuff (hobby). Some time ago, I decided to built a GUI interface for frequently used comment line tools which was more convenient for my colleagues. They prefer to ...
written 5.8 years ago by ete100
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Tool: Open source bioinformatics tools: Blaster, Primer Factory, Labtools
... Hello! I would like to advertise my new webpage and software tools (open source):  http://www.snowformatics.com/ Blaster - A simple and intuitive multitool for performing some of the most common tasks in nucleotide and protein sequence work. Primer Factory - A primer design and primer search too ...
tool primer bowtie software alignment blast written 5.8 years ago by ete100 • updated 5.8 years ago by Istvan Albert ♦♦ 85k
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Comment: C: Beta testing bioinformatic tools
... Ok, thank you very much this will be very helpful! ...
written 6.1 years ago by ete100
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Comment: C: Beta testing bioinformatic tools
... Yes, at least Linux and with some help of others perhaps also OSX (I have no device for testing).  ...
written 6.1 years ago by ete100
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Tool: Beta testing bioinformatic tools
... Hello! I am looking for beta testers for three bioinformatic tools I have written. They include a sequence alignment tool, a primer search and design tool and a small helper tool for the lab. If you are interested to test the programs (at the moment Windows only) please contact via labtools[at]ipk- ...
tool bowtie software primer design blast primer3 written 6.1 years ago by ete100
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Comment: C: RNAduplex sequence input format
... Sorry, Asaf I am still having problems: In Python I do something like this: cmd = 'RNAduplex < duplex.seq' p = subprocess.Popen(cmd,shell=True,stdout=subprocess.PIPE)   But I want to give the raw sequences as paramters. I tried something like: cmd = "AGCT\nACGT\n" RNAduplex but it does not ...
written 6.3 years ago by ete100
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Comment: A: RNAduplex sequence input format
... Hello Asaf! I want to start RNAduplex from a cmd in a Python script by entering the sequence directly (not a file).  I tried already but without success: 'RNAduplex ATG GTC' 'RNAduplex ATG\nGTC' Thanks ...
written 6.3 years ago by ete100
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RNAduplex sequence input format
... Hello! I am using RNAduplex  from Vienna package and trying to find out in which format the two sequences has to be passed to the cmd. The manual only say "reads two RNA sequences from stdin or <filename>". I used a filename but this might lead to IOErrors if my query sequence is very long. D ...
rna-seq written 6.3 years ago by ete100
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Comment: C: Best Practices/Methods For Developing Bioinformatics Related Web Applications
... I have to write it myself because I will also run it locally (confident data) as well as public on a webhoster. Since it is a private project it should be as cheap as possibler Does anybody tried luban? ...
written 7.9 years ago by ete100
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Best Practices/Methods For Developing Bioinformatics Related Web Applications
... Hello everybody! I'm planning to transform a few windows programs which I wrote into web applications. Can anybody give me some tips, suggestion or experience with this (Framework, Hosting)? I will use Python. I was thinking about GAE but unfortunately you can not run processes on it. I will need B ...
python web blast bowtie written 7.9 years ago by ete100 • updated 7.8 years ago by Yannick Wurm2.3k

Latest awards to ete

Popular Question 4.8 years ago, created a question with more than 1,000 views. For ViennaPackage define output file name and location(RNAplfold)
Popular Question 4.8 years ago, created a question with more than 1,000 views. For Beta testing bioinformatic tools
Popular Question 4.8 years ago, created a question with more than 1,000 views. For RNAduplex sequence input format
Popular Question 4.8 years ago, created a question with more than 1,000 views. For Best Practices/Methods For Developing Bioinformatics Related Web Applications
Popular Question 4.8 years ago, created a question with more than 1,000 views. For Open source bioinformatics tools: Blaster, Primer Factory, Labtools
Appreciated 5.8 years ago, created a post with more than 5 votes. For Open source bioinformatics tools: Blaster, Primer Factory, Labtools

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